Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g0989 | ATGAATTGCTGGGAGGCAGAAGTGATGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGAGACACAAGACTGATTTCTCTCATTCCTCTAAGGAAAGGAAAGACAAACTAGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCGCCATATGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCGATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGATCCGGAGCTGCACAACCACAGCCTGAGAAACAGAGGTTTATGTCTGGTTCCAATCTCATGTACTGCTGGGGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACTTCCCCCAAATTCGAGAAGACCATGTCTCCATTTCATTGA | 477 | 45.7 | MNCWEAEVMEVETMMEQKRNLCSVDESSLTSLTSKRHKTDFSHSSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQDPELHNHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKTMSPFH | 158 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 47344280 | 47349449 | + | Sed0023886.2 | Sed02g0989 | 704657 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g0989 | 158 | Gene3D | - | 33 | 105 | IPR036638 | GO:0046983(InterPro) | |
Sed02g0989 | 158 | FunFam | Transcription factor bHLH113 family | 35 | 111 | - | - | |
Sed02g0989 | 158 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 35 | 129 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Sed02g0989 | 158 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 36 | 85 | IPR011598 | GO:0046983(InterPro) | |
Sed02g0989 | 158 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 41 | 101 | IPR036638 | GO:0046983(InterPro) | |
Sed02g0989 | 158 | CDD | bHLH_AtbHLH_like | 44 | 93 | IPR045239 | - | |
Sed02g0989 | 158 | SMART | finulus | 44 | 91 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0989 | Sed-Chr2:47344280 | Sed02g0991 | Sed-Chr2:47344280 | 4.80E-86 | dispersed | |
Sed02g0988 | Sed-Chr2:47344280 | Sed02g0989 | Sed-Chr2:47344280 | 3.40E-82 | tandem | |
Sed02g0989 | Sed-Chr2:47344280 | Sed02g0990 | Sed-Chr2:47344280 | 7.00E-53 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g0989 | - | - | - | 0.0 |