Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0989 ATGAATTGCTGGGAGGCAGAAGTGATGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGAGACACAAGACTGATTTCTCTCATTCCTCTAAGGAAAGGAAAGACAAACTAGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCGCCATATGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCGATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGATCCGGAGCTGCACAACCACAGCCTGAGAAACAGAGGTTTATGTCTGGTTCCAATCTCATGTACTGCTGGGGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACTTCCCCCAAATTCGAGAAGACCATGTCTCCATTTCATTGA 477 45.7 MNCWEAEVMEVETMMEQKRNLCSVDESSLTSLTSKRHKTDFSHSSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQDPELHNHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKTMSPFH 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47344280 47349449 + Sed0023886.2 Sed02g0989 704657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0989 158 Gene3D - 33 105 IPR036638 GO:0046983(InterPro)
Sed02g0989 158 FunFam Transcription factor bHLH113 family 35 111 - -
Sed02g0989 158 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 35 129 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed02g0989 158 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983(InterPro)
Sed02g0989 158 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 101 IPR036638 GO:0046983(InterPro)
Sed02g0989 158 CDD bHLH_AtbHLH_like 44 93 IPR045239 -
Sed02g0989 158 SMART finulus 44 91 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0989 Sed-Chr2:47344280 Sed02g0991 Sed-Chr2:47344280 4.80E-86 dispersed
Sed02g0988 Sed-Chr2:47344280 Sed02g0989 Sed-Chr2:47344280 3.40E-82 tandem
Sed02g0989 Sed-Chr2:47344280 Sed02g0990 Sed-Chr2:47344280 7.00E-53 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0989 - - - 0.0