Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0992 ATGGAGGTAGAAACAATGATGGAACAGAAAAGGAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGAGACACAAGACTGATTTCTCTCATTCCTCTAAGGAAAGGAAAGACAAACTAGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCGCCATATGGAAAGACAGATACGGCATCTGTTCTTCTGGAGGCGATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGATCCGGAGCTGCACAACCACAGCCTGAGAAACAGAGGTTTATGTCTGGTTCCAATCTCATGTACTGCTGGGGTTGCACGCAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACTTCCCCCAAATTCGAGAAGACCATGTCTCCATTTCATTGA 453 45.47 MEVETMMEQKRNLCSVDESSLTSLTSKRHKTDFSHSSKERKDKLGERIMALQQLVSPYGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQDPELHNHSLRNRGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKTMSPFH 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47344280 47349449 + Sed0023886.5 Sed02g0992 704660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0992 150 MobiDBLite consensus disorder prediction 18 41 - -
Sed02g0992 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 93 IPR036638 GO:0046983(InterPro)
Sed02g0992 150 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 121 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed02g0992 150 CDD bHLH_AtbHLH_like 36 85 IPR045239 -
Sed02g0992 150 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 77 IPR011598 GO:0046983(InterPro)
Sed02g0992 150 SMART finulus 36 83 IPR011598 GO:0046983(InterPro)
Sed02g0992 150 FunFam Transcription factor bHLH113 family 27 103 - -
Sed02g0992 150 Gene3D - 25 98 IPR036638 GO:0046983(InterPro)
Sed02g0992 150 MobiDBLite consensus disorder prediction 23 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0992 Sed-Chr2:47344280 Sed12g0574 Sed-Chr12:3476681 1.50E-68 dispersed
Sed02g0991 Sed-Chr2:47344280 Sed02g0992 Sed-Chr2:47344280 1.40E-80 tandem
Sed02g0992 Sed-Chr2:47344280 Sed02g0993 Sed-Chr2:47344280 2.50E-47 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0992 - - - 0.0