Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g0995 ATGGAATCGAAAAGAAAGCTAGAAATAGAAGATGTTGAAGAAGTATTGGTTAAAAGAACTAGAACTTCCAATTTGGATGAAGAAGAAGAAGAACGATTGCGCGATCGAAAAGAGAGGGAGCAATTAGAGAAAAATCTAAGGCAAAGGGATGCTGTTGGAACCAAAAACTTGTTCAAGAAGGAAAGATCAAAGGGTGTTGTGGGAAAGAATGAAATTGGTCATTTGAGGAAAATTTCTAGACAAGAGTATTTGATGAGAAGGGAGCAGAAAAAAATACAAGAAATCAGAGAAGAGATCGAAAACGATCGTTTTCAACCAAAGCGAGATCGAGATGAGGTAATTAAGCGGTATAAGAAGGATGTATATGAGCTTGTGACTACTAATGAGGCTGATTATGACATCCATGATCGGTATCGAATGCCCGAAGCTTACGATGATCACGAAGGAGTCCCTAATCAGGATAAGAGGTTTTCCGTGGCAATGCAGCGATATACGGATTCAAGTCGAAACGATAAAACATGGGAGGAACACCAATTAGAGAAAGCAACCATGAAATTTGGCTCCAAAAATAAAAAGAGAGCATCTGGTGATGAATATGAGTTTGTGTTTGAGGATCAGATTGAGTTTATTAAGGAATCTGTTATGGAGAGTGATGAGTTTCTCAAGGCTGAATCAGTTGAGATGTCCAAGTCCAATGCTAGGTCCGCTTTGGAGAAGTTGCAAGAAGAGAGAAAAACATTGCCGATCTATCCATACCGTGATCAGTTACTCCAAGCTATTAATGATTATCAGATTCTTGTCATTGTCGGTGAGACGGGTTCGGGAAAGACCACACAAATACCTCAATACCTTCACGAAGCTGGATATACGAAGCGAGGGAAAGTTGGGTGCACACAGCCGCGTCGTGTTGCTGCTATGAGTATTGCTTCTCGGGTATCTCAAGAACTTGGAGTCAAGCTCGGGCACGAGGTTGGCTATTCCATACGTTTTGAGGATTGCACGTCGGATAAGACCGTTTTGAAGTACATGACAGACGGGATGCTGTTACGAGAGTTCCTTGTTGAACCTGACCTTGCAAGCTACAGTGTTATAATAGTGGATGAGGCTCATGAAAGAACACTATCAACTGACGTTCTGTTTGGGCTAGTGAAAGATATTGCAAGATTTCGACCTGATTTGAAGTTACTAATCTCAAGTGCAACTCTTGATGCTGAGAAGTTCAGTGATTACTTTGATAGAGCTCCAATATTTAAAATTCCTGGCAGACGATATCCGGTCGAAATTCGCTTCACGAAAGCTCCCGAACCAGACTATTTAGATGCAGCCATTGTTACTGTACTTCAAATTCATATCTCAAAGCCTGCAGGAGATATATTGGTGTTTCTCACAGGTCAAGAAGAGATTGAAAATGCCGAGGGAATATTAAAACATAGAGCTCGAGGACTCGGCACAAAAATTGCGGAACTTATTATCTGTCCCGTATATGCTAACTTACCATCAGAGCTACAAGCTAAGATATTTGAACCCACACCAAAAGGAGCAAGGAAAGTTATCTTGGCAACTAATATAGCAGAGACATCATTGACAATTGATGGAATAAAATATGTCATTGATCCTGGCTTTCAAAAAATGAAATCCTATAATCCAAAGACTAGGATGGAGTCATTGCAAGTGGTTCCCATCTCAAAAGCTTCGGCAAATCAAAGAGCGGGACGATGTGGACGAACGGGTCCTGGAATGTGCTTTCGTTTGTATACTTCTTTTACTTATTCTGATGAATTGGAAGACAATATGACACCAGAAATACAAAGAACAAATCTTGCTAATGTTGTCCTTACCTTAAAGAGCCTTGGTATTAATGATTTGGGAAAATTTGATTTTATGGACCAACCACCATGTGAAGCATTGCTAGAAGCCTTGGAGTTGCTCTTTTCCCTTAATGCTTTAAATAAATTTGGTGAATTGACTAAGTTGGGTAGGCGAATGGCAGAGTTTCCTCTCGATCCCATGCTTTCTAAGATGATCGTTGCTTCCGAGAAGTTCAAGTGTTCAAATGAAGCTATTTCTATTGCTGCTATGCTTTCGGTCGACGGTTCTATATTTTATCGTCCAAAGAACAAACAAGTTCATGCCGACAATGCGCAGATGAATTTTCACCGCGGGAATGTGGGGGATCACATTGCATTATATAATGTATACAACTCTTGGAGGGAAACAAATTACTCTACTCAATGGTGCTATGAAAATTACATCCAAGTTAGAAGTATGAAACGTGCTAGAGATATCAGAGAACAACTTGAGGGGCTTCTAAAAAGGGTTGAAATTGAACTAACTACAAACTCCAATGACTTGGAAGCAATAAAAAAGACCATATTATCTGGATTTTTTCCCCATGCTGCAAAGTTACAAAAGGATGGTTCTTATAAGACACTTAAACATCCACAAACAGTTCACATACATCCTAGCTCAGGATTGGTTCAAGGTTTTCCAAAGTGGATTATATACCATAAATTGGTATGTACCTCAAGAGAATATATGAGACAAGTCACAGAATTAAAGCCTGAATGGTTGGTTGAAATTGCTCCACATTACTATCATCTCAAGGATGTTGAAGATTTGTGTCAAAGGAAGATGCCTCGAGTTTAA 2646 39.68 MESKRKLEIEDVEEVLVKRTRTSNLDEEEEERLRDRKEREQLEKNLRQRDAVGTKNLFKKERSKGVVGKNEIGHLRKISRQEYLMRREQKKIQEIREEIENDRFQPKRDRDEVIKRYKKDVYELVTTNEADYDIHDRYRMPEAYDDHEGVPNQDKRFSVAMQRYTDSSRNDKTWEEHQLEKATMKFGSKNKKRASGDEYEFVFEDQIEFIKESVMESDEFLKAESVEMSKSNARSALEKLQEERKTLPIYPYRDQLLQAINDYQILVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIASRVSQELGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLVEPDLASYSVIIVDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDRAPIFKIPGRRYPVEIRFTKAPEPDYLDAAIVTVLQIHISKPAGDILVFLTGQEEIENAEGILKHRARGLGTKIAELIICPVYANLPSELQAKIFEPTPKGARKVILATNIAETSLTIDGIKYVIDPGFQKMKSYNPKTRMESLQVVPISKASANQRAGRCGRTGPGMCFRLYTSFTYSDELEDNMTPEIQRTNLANVVLTLKSLGINDLGKFDFMDQPPCEALLEALELLFSLNALNKFGELTKLGRRMAEFPLDPMLSKMIVASEKFKCSNEAISIAAMLSVDGSIFYRPKNKQVHADNAQMNFHRGNVGDHIALYNVYNSWRETNYSTQWCYENYIQVRSMKRARDIREQLEGLLKRVEIELTTNSNDLEAIKKTILSGFFPHAAKLQKDGSYKTLKHPQTVHIHPSSGLVQGFPKWIIYHKLVCTSREYMRQVTELKPEWLVEIAPHYYHLKDVEDLCQRKMPRV 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47350195 47352840 - Sed0002514.1 Sed02g0995 704663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g0995 881 CDD SF2_C_RHA 424 585 - -
Sed02g0995 881 Coils Coil 223 243 - -
Sed02g0995 881 SMART ha2_5 638 730 IPR007502 -
Sed02g0995 881 Gene3D - 423 598 IPR027417 -
Sed02g0995 881 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 423 598 - -
Sed02g0995 881 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 445 618 IPR001650 -
Sed02g0995 881 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 622 723 - -
Sed02g0995 881 PANTHER ATP-DEPENDENT RNA HELICASE 168 868 - GO:0003723(PANTHER)|GO:0004386(PANTHER)|GO:0005622(PANTHER)|GO:0071013(PANTHER)
Sed02g0995 881 Pfam Helicase associated domain (HA2), ratchet-like 668 729 - -
Sed02g0995 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 242 772 IPR027417 -
Sed02g0995 881 Coils Coil 78 105 - -
Sed02g0995 881 Pfam Helicase associated domain (HA2), winged-helix 639 667 IPR048333 -
Sed02g0995 881 Pfam Helicase conserved C-terminal domain 448 577 IPR001650 -
Sed02g0995 881 SMART helicmild6 469 577 IPR001650 -
Sed02g0995 881 Pfam AAA domain 263 388 IPR049945 GO:0016887(InterPro)
Sed02g0995 881 Coils Coil 756 776 - -
Sed02g0995 881 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 362 371 IPR002464 -
Sed02g0995 881 SMART ultradead3 245 429 IPR014001 -
Sed02g0995 881 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 205 422 - -
Sed02g0995 881 Gene3D - 199 422 IPR027417 -
Sed02g0995 881 Gene3D - 624 780 - -
Sed02g0995 881 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 257 420 IPR014001 -
Sed02g0995 881 Coils Coil 25 45 - -
Sed02g0995 881 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 787 864 IPR011709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g0995 K12813 - - csv:101206270 1331.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0995 Sed-Chr2:47350195 Sed08g0256 Sed-Chr8:1492695 0.00E+00 dispersed
Sed02g0995 Sed-Chr2:47350195 Sed12g1991 Sed-Chr12:30859652 0.00E+00 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39