Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1004 | ATGATGGAAAGTTTCCCAAATTATCTCTCAACTTCATCATCTTCAACCTTCCTCCCCATCCACCAAATGTTGATTTCTCGAGCCTCCGAGCTTGCCGTTCCCGACAGGTTACCAATGTTTCGTGACGCTTCGGCGAACGACATGTCGGTCGATGCAACTAGTAGTATGAAGGACAATGTGCTCTCGCGTAGTAAAACCTTCCATGTTGATGGGTCAGCACATATTGGAATGGATGGGTTGGAAAAGAACAAGGTCATCGAGACGGGAGCGTCGGCGACACCGGGACGGGGAGATTACGATAAGAAAAAGAAGACGAGAAGTCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGATGACGGTTATAGATGGAGAAAGTATGGACAAAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAATACAAAGGCTAACAAGAGATGAAGGTGTGGTTGTGACAACTTATGAAGGAATTCATTCTCATCCAATTGAGAAATCCACTGACAACTTTGAGCATATTTTAACTCAGATGAAAATTTACACTTCTTATTAA | 603 | 42.45 | MMESFPNYLSTSSSSTFLPIHQMLISRASELAVPDRLPMFRDASANDMSVDATSSMKDNVLSRSKTFHVDGSAHIGMDGLEKNKVIETGASATPGRGDYDKKKKTRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQIQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILTQMKIYTSY | 200 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 47431827 | 47436864 | - | Sed0008754.1 | Sed02g1004 | 704672 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1004 | 200 | Gene3D | WRKY domain | 105 | 180 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1004 | 200 | SUPERFAMILY | WRKY DNA-binding domain | 113 | 180 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1004 | 200 | FunFam | WRKY transcription factor 57 | 107 | 181 | - | - | |
Sed02g1004 | 200 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 73 | 181 | IPR044810 | GO:0003700(InterPro) | |
Sed02g1004 | 200 | Pfam | WRKY DNA -binding domain | 122 | 179 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1004 | 200 | ProSiteProfiles | WRKY domain profile. | 116 | 181 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1004 | 200 | SMART | WRKY_cls | 121 | 180 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1004 | Sed-Chr2:47431827 | Sed13g0848 | Sed-Chr13:6213979 | 9.60E-31 | dispersed | |
Sed08g1496 | Sed-Chr8:29461552 | Sed02g1004 | Sed-Chr2:47431827 | 9.00E-46 | transposed | |
Sed12g0617 | Sed-Chr12:3657534 | Sed02g1004 | Sed-Chr2:47431827 | 6.50E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37583 | PF03106 | WRKY | 2.30E-25 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1004 | - | - | - | 0.0 |