Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1004 ATGATGGAAAGTTTCCCAAATTATCTCTCAACTTCATCATCTTCAACCTTCCTCCCCATCCACCAAATGTTGATTTCTCGAGCCTCCGAGCTTGCCGTTCCCGACAGGTTACCAATGTTTCGTGACGCTTCGGCGAACGACATGTCGGTCGATGCAACTAGTAGTATGAAGGACAATGTGCTCTCGCGTAGTAAAACCTTCCATGTTGATGGGTCAGCACATATTGGAATGGATGGGTTGGAAAAGAACAAGGTCATCGAGACGGGAGCGTCGGCGACACCGGGACGGGGAGATTACGATAAGAAAAAGAAGACGAGAAGTCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGATGACGGTTATAGATGGAGAAAGTATGGACAAAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAATACAAAGGCTAACAAGAGATGAAGGTGTGGTTGTGACAACTTATGAAGGAATTCATTCTCATCCAATTGAGAAATCCACTGACAACTTTGAGCATATTTTAACTCAGATGAAAATTTACACTTCTTATTAA 603 42.45 MMESFPNYLSTSSSSTFLPIHQMLISRASELAVPDRLPMFRDASANDMSVDATSSMKDNVLSRSKTFHVDGSAHIGMDGLEKNKVIETGASATPGRGDYDKKKKTRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQIQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILTQMKIYTSY 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47431827 47436864 - Sed0008754.1 Sed02g1004 704672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1004 200 Gene3D WRKY domain 105 180 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1004 200 SUPERFAMILY WRKY DNA-binding domain 113 180 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1004 200 FunFam WRKY transcription factor 57 107 181 - -
Sed02g1004 200 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 181 IPR044810 GO:0003700(InterPro)
Sed02g1004 200 Pfam WRKY DNA -binding domain 122 179 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1004 200 ProSiteProfiles WRKY domain profile. 116 181 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1004 200 SMART WRKY_cls 121 180 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1004 Sed-Chr2:47431827 Sed13g0848 Sed-Chr13:6213979 9.60E-31 dispersed
Sed08g1496 Sed-Chr8:29461552 Sed02g1004 Sed-Chr2:47431827 9.00E-46 transposed
Sed12g0617 Sed-Chr12:3657534 Sed02g1004 Sed-Chr2:47431827 6.50E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37583 PF03106 WRKY 2.30E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1004 - - - 0.0