Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1006 ATGAAGTTATTAGGATGGATGCACCGCAAGTTCAGGCAAAACAGTGGCGAACCAATCAAAGATTTTGTCATTGGCAACCCATCAAGTGATGACCCACAATATTTCCCAAGAATAAGCATCAACAAACCATTCAAACAAGCCCAAACAGGCCTGAATGATCAAGACTTTGATGAATTAGATGAATCACATGTCTCCAATGAAATCTTCCCTGGCTTTCTTGCCATTGGAACCTTGGGCTCTAATTCAGATCCAGCAACACCAAAATTCTCCATCTCCATTGAATACATTACTGAAAGAGATCAAACTGACCAAGTCACACAGAATGACCTCAAGCTCATCAATGACGAGCTCGAGAAGGTGCTCGAGGAGGCGAAAGACGACGGAGGGTCCAGGCGGAACAGCAACGGGAAAGTGTTGGAAGGATCCGAGAACAATGGTGGAGATGTGGTAATTTGCCCTCTTCAAGGGTATTTGTTTGGGTCCGCGGTTGAGTTGTCGGAGACGACGGCGGTGGCGAAGAAGGAGAACCGGACCTCGCTCGGGGAGCTGTTTCTGAAGAGTAAAGTATCAGAGGAATTAGTTGGGGGAGGAAAATGTGAGAAGGAAGGGGAACATAAGTATGGGATTCAATTGATAAAAAAGAAGCTGAAGAAGAGAATGCTTGGTGCTGCTCATTCTAAGAGCTCTTTAAGTTCCTCTTCTGCTGGTGGAGTCTTGGATGTTTCAACTGATCAAACTAAATTGCACAAGATTCTTCATTTGTTCAATAGGTCAAAAGTTTATCCTGAAAGCAGCCCAATGATGAAAGAAAAGTTGAATCAAAAGGCCCAAAAGAATGACAAAAAGAAAAAAACAAACATTATTGATGGAGCTAATAAGAACAATGGAGATAGAACCTCAACAGAAGAAGACATCATGATCTTTCCAAAAAAGCTCATTTTCAAGAAAAACTTACTACCACATTACAAAAGAAAATCTGTTCCTAAGCAGTTCTCAAATGATGATAATGATGATGTTGATTCCATTTGGAACAAGGAGCAATGGATCAAAACTGAAGCAGACTGTAAGTGA 1071 41.55 MKLLGWMHRKFRQNSGEPIKDFVIGNPSSDDPQYFPRISINKPFKQAQTGLNDQDFDELDESHVSNEIFPGFLAIGTLGSNSDPATPKFSISIEYITERDQTDQVTQNDLKLINDELEKVLEEAKDDGGSRRNSNGKVLEGSENNGGDVVICPLQGYLFGSAVELSETTAVAKKENRTSLGELFLKSKVSEELVGGGKCEKEGEHKYGIQLIKKKLKKRMLGAAHSKSSLSSSSAGGVLDVSTDQTKLHKILHLFNRSKVYPESSPMMKEKLNQKAQKNDKKKKTNIIDGANKNNGDRTSTEEDIMIFPKKLIFKKNLLPHYKRKSVPKQFSNDDNDDVDSIWNKEQWIKTEADCK 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47446961 47451573 - Sed0009839.2 Sed02g1006 704674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1006 356 MobiDBLite consensus disorder prediction 123 142 - -
Sed02g1006 356 Coils Coil 107 127 - -
Sed02g1006 356 PANTHER PROTEIN LAZY 1 1 355 IPR038928 GO:0009630(InterPro)|GO:2000012(InterPro)
Sed02g1006 356 MobiDBLite consensus disorder prediction 273 299 - -
Sed02g1006 356 MobiDBLite consensus disorder prediction 273 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1006 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1006 Sed-Chr2:47446961 Sed07g0100 Sed-Chr7:967815 1.20E-68 dispersed
Sed02g1005 Sed-Chr2:47445567 Sed02g1006 Sed-Chr2:47446961 2.50E-199 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1277 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00189 Cam06g0021 Cec06g0208 Cco06g0203 Clacu06g0206 Cmu06g0199 Cre06g0973 . . . . . Csa04g00302 Chy11g01800 Cme11g02331 . Blo12g00280 . . Bpe14g00800 . . . Sed02g1006 . . . . . . Cpe17g01063 . Bhi12g02436 Tan06g1499 Cmetu06g2578 . Hepe03g1130 . . . . . . . . . Lsi09g01735 . . Cme07g01916
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001778 3 3 3 3 3 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 1 2 2 2 2 2 5 2 1 69