Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1010 ATGGAGAAAATCCTACCCCCAGAAAAGTCAGAAAGTTTTTCAAAGAATTTCAATCGAAGGATTGCAAATTTGAACTCACCTCGCCGAATTGTCGAAGATGCTAATAAATCAGAATCCGAAAAGCTTCCTGATAAAGAGGAAGCCATTGTTGAAGATTACAATCTTTCTGACTCCGAAACCGCCTTGGTTTTTGAAGAGGTTGATCGATTCCTCGAAGCTTTGTCGAAGGGCGGGGAGGACAGATCAAATCTTGTTCATGAAATTCCGAGCTCTGTTATTTCCTTATCGAAAATGGTGGACTCCATGATCTACAAGTACAATACTTCTGCCAAGGATTCGAGTAGAGATTCCGAACGAGACGCATTATTTTTCAAAGCCGTGAATCGCATTGCGATGATTGCGACTAAACTAAGCGAAATCCCTTCAAACATGGCCACAAATCCTTCGCTGAATCGAACCACCACGTCTCTACAAAAAGCCATGTCGTTCTTGGACGAAGAACTGAATACCCTTTTAAAAGAATGCAAATATCGCGAGCTCGATTCGAAATCAGACAAAAAAGCGTCAAAACAATCGTCGTTCAAGACAATCAACGAAACCTCAACAGATCAACAACATCAAAAGCGCCATCATGAATCATCATCCAAGCTTCAAACTTCCAAGGAAAAGGATCAATACCTCTCATTCTCACCCGAAACCGTAACGAACATGAGGAGAATCGTCGGAACCATGATCTCTGCCGGGTACGAAAAGGAATGTTGCATGAGTTACAGCTTCCTTCGACAAAGCTCATTCAAAGGAATCTTAAACAAGCTCGGGTACGAAAGCATCTGCATAGACGACATCCAGAAAATGCACTGGGAGACTCTCCAATCCGAAATCGACAAATGGATCGCCGTCGTCAACAAATGCTCAAAATCCCTCTTCCCAGGCGAGTGGAAGCTCTGTGATTCTGTGTTCACAGACCATCCCTTCATTTCCCACACACTCATCAGCAATCTAACAAGAGCAGTAGTAATCAAGCTGCTCAACTTCGCAAACGCCGTGGTTCTAACCAAACGGTCCGCAGAGAAGATGTTCAAACTACTCGACATGTACGAAACAACCCGCGATTTGATTCCCGCCATCAACGATTTCCCTGAAAATTGCAGAAAAGAGCTAATCCTAGAAGCAGAAGGGGTAAAAACCAGCATAGGCGAAGCCATCGTTGGGATTTTCTACGACCTAGAAAATTCAATCAAAAGCGACAATGCGAAAATCCCAGTTCCAGGAGGAGCAGTTCATCCATTAACACGATACATAATGAATTACCTAAAATACGCCTGCGAGTACAAAGAAACCCTAGAACAGGTCTTCGAATTCCTAAGCCCTAAAATCGAAGAACATGAATCCACAACAATCGACGAAAACGACGATTCCTCGCCGAGAAAGTCTCAGCTAGGGATCCAGATTGAAATGGTGATGGATCTGCTGGACGCGAATCTGGCGATGAGATCCAAGCTCTACCGCGACGCATCGCTCCGATACATCTTCCTGATGAACAACGGAAGGTACATAGTACAGAAAATCAAAGGATCGACAGGAATCACAGTGCTAATGGGGGATCGATGGTGCCGAAAGCGATCTACGAATCTAAGACAGTACCACAAGAATTACCAGAGGGAGACGTGGAGCAAGGTGCTGCAGTGCCTCAACCACGAAGGATTGACGGTGAACGGGAAGGTTTCGAAGCCGATTCTGAAGGAGAGATTCAAGAGCTTCAACGCCATGTTCGATGAGATCCACAAGACGCAGAGCACGTGGGTGGTCAGCGACGACCAGCTCCAGTCGGAGCTCCGGATTTCGGTGTCGGCGGTGATGATTCCGGCGTACCGGTCGTTTGTCGGGAGATTCAAGCAGCATTTCGATTCCGGGAGACAATCGGAGAAGTATATAAAGTATCAGCCCGAAGATATTGAAGGTTTGATTGATGATTTGTTTGATGGAAATACTGCGTCTATGGGGAGAAGAAGATAA 2016 45.29 MEKILPPEKSESFSKNFNRRIANLNSPRRIVEDANKSESEKLPDKEEAIVEDYNLSDSETALVFEEVDRFLEALSKGGEDRSNLVHEIPSSVISLSKMVDSMIYKYNTSAKDSSRDSERDALFFKAVNRIAMIATKLSEIPSNMATNPSLNRTTTSLQKAMSFLDEELNTLLKECKYRELDSKSDKKASKQSSFKTINETSTDQQHQKRHHESSSKLQTSKEKDQYLSFSPETVTNMRRIVGTMISAGYEKECCMSYSFLRQSSFKGILNKLGYESICIDDIQKMHWETLQSEIDKWIAVVNKCSKSLFPGEWKLCDSVFTDHPFISHTLISNLTRAVVIKLLNFANAVVLTKRSAEKMFKLLDMYETTRDLIPAINDFPENCRKELILEAEGVKTSIGEAIVGIFYDLENSIKSDNAKIPVPGGAVHPLTRYIMNYLKYACEYKETLEQVFEFLSPKIEEHESTTIDENDDSSPRKSQLGIQIEMVMDLLDANLAMRSKLYRDASLRYIFLMNNGRYIVQKIKGSTGITVLMGDRWCRKRSTNLRQYHKNYQRETWSKVLQCLNHEGLTVNGKVSKPILKERFKSFNAMFDEIHKTQSTWVVSDDQLQSELRISVSAVMIPAYRSFVGRFKQHFDSGRQSEKYIKYQPEDIEGLIDDLFDGNTASMGRRR 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47485737 47488098 + Sed0021156.1 Sed02g1010 704678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1010 671 MobiDBLite consensus disorder prediction 183 224 - -
Sed02g1010 671 Pfam Exo70 exocyst complex subunit C-terminal 296 658 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed02g1010 671 SUPERFAMILY Cullin repeat-like 123 661 IPR016159 -
Sed02g1010 671 PANTHER EXOCYST COMPLEX PROTEIN EXO70 96 663 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed02g1010 671 MobiDBLite consensus disorder prediction 202 219 - -
Sed02g1010 671 Gene3D Exocyst complex component Exo70 104 670 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1010 Sed-Chr2:47485737 Sed03g0894 Sed-Chr3:5548698 1.10E-150 dispersed
Sed02g1010 Sed-Chr2:47485737 Sed01g2974 Sed-Chr1:27006421 5.50E-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1010 K07195 - csv:101220402 1038.1