Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1025 ATGAATCTCAATCCCAAACCAAATCCACACATGGCTTCCCTCTCATTCCTCGCCCTTTCCCTTTCCATGGCGTTTCTTCTCCACAGCTCCACAGCCATCAATGGCGTTTCCCCTCAGCTCAACGACGACATTCTCGGCTTAATCGTCTTCAAATCCGACCTCCACGACCCCTTTTCATCTCTCTCATCGTGGAACGAAGACGACGACTCCCCTTGTTCTTGGAGCTTCGTGAAATGCAACCCCAACAACGGCAGAGTTTCTGAAATTTCCATTGATGGGTTGAACTTATCTGGGCGAATCGGACGAGGGCTTGAGAAGTTGCAGCATCTTAAGGTATTGTCCATTTCTCGCAATAATTTTACTGGCAATGTGAACCCTCAGCTTGTTCTTCCGTCTAGTCTCGAGAGGGTTAATTTTAGTTGGAATGGTTTCTCTGGACGAATCCCTACCGGTTTTATCGATATGTCGTCTGTTAGATTTGTTGATTTTTCGAATAATTTGTTCTCTGGACCTGTTGGTGATGATTTGTTTATGAACTGTTCTTCGCTTCATTACCTTAATCTTGCGTCTAATTTGCTTCAAGGTTCTGTCCCTAATACAATGCCCACAAGGTGTTTGTATTTAAACACACTCAATATTTCCAATAATCAGTTCTCTGGTGGGTTGGATTTTGGAGCTTTGACGAGGTTGAGGACATTGGATCTCTCTAACAATGCCATTTCTGGACTTTTCCCACAAGGGATTTCCACCATTCATAATCTGAAAGAGCTTAAGTTGCAGGGCAATCAATTCTCAGGGTCTTTACCTGCAGATTTGGGGTTATGCCTCCACTTATCTACCTTCGACGTGAGCCAAAATCGCCTCGCGGGACCGTTACCGGAGTCGATGAGGCTCCTAACTTCACTGACCCTTTTCAACATAGGATTCAATGCTTTCTCAGGGGAGTTCCCACAATGGATTGGGAACATGACAAGTTTGGAGTATGTGGATTTCTCAAGCAATGGCTTCACTGGAAGCCTTCCATTGGCAATGGGTGGGTTGAAATCTGTCAAATACATTAGTTTTTCAAACAACAAGCTCTCTGGGAACATCCCTGAGACATGGAAGGATTGTTCAATGCTGTCTGTGATAAAGCTTGAAGGGAACAGCTTCAATGGGGGGCTGCCAGAGGGGGTGTTTGGATTGGGTTTGGAGGAGATGGATTTGTCTAGGAATGAGCTGATTGGTTCAATCCCAGCAGGGTCAAGCAAACTGTATGAGAAGCTGACAAGGATGGACTTGTCAAGGAACAGATTAGAAGGGAACTTTCCAGCAGAAATGGGATTGTATAGAAATTTGAGGTACTTGAATCTGTCATGGAACAAGTTTAAGGCAGAGATTCCACCAGAAATGGGGATGTTTGAGAAGTTGAGTGTGTTGGACATGAGAAGCAGTGAGTTACATGGATCAATTCCTGGAGAGTTGTGTGATTCTGGGAGTTTGGGGATTGTTCAGCTTGATGGAAACTCATTGATTGGTTCAATTCCTGATGAGATTGGAAACTGTCTCTCACTTTACTTGCTGAGCTTGTCCCACAACAATTTAAGTGGACCAATTCCAAAGTCAATCTCCAAGCTAAGCAAGTTAGAGATTCTAAGACTAGAATCAAATCAATTAAATGGAGAAATACCCCAAGAGCTTGGAGTTCTTCAAAATCTCCTTGCTGTTAACATTTCATTCAATATGCTCACAGGCAGGCTCCCTGTTGGTGGCATTTTTCCAAGCTTAGATCAAAGTGCTTTGCAAGGAAACTTAGGGCTTTGCTCCCCTTTGCTTAAAGGCCCTTGCAAAATGAATGTCCCTAAGCCCCTTGTTCTTGACCCCAATGCCTATCCCAACCAAATGGGAGGCCAAAGCACCAGAAACAAACCTTCTGAATACTCTAATCCTTCCCATCATGTGTTCTTCAGTATCTCTGCCATTGTTGCCATTTCTGCTGCCACAATGATTGCCATTGGAGTGCTTGTTATTACCTTGTTGAATGTGTCAGCTCGCAGGAGATCACTCGCGTTTGTCGACAATGCCTTGGAAAGCATGTGCTCGAGCTCTTCGAAGTCTGGGACTGTGACTGCTGGTAAGCTTATGTTGTTTGATTCGAACTCGAGTTCCTCGCCAAACTGGGTTAGTGACCATGAAGCCTTGCTGAATAAGGCCTCTGAGATTGGTGCTGGATTTTTTGGAACTGTTTATAAGGTTTCATTGGGGGATCAAGAATGGAGAGATGTGGCTATCAAGAAGCTTGTGGAGTCAAACATGATCCAAAATCCTGAAGATTTTGACTGCGAAATTCGAATCTTGGGGAAGGTCAAGCACCCGAATTTGATCGGCTTAAAGGGGTACTACTGGACTGTTCAAACTCAGCTCTTGCTAATGGAGTATGCTACCAATGGAAGTCTTCAAACTCAACTCCATGGAAGGCTACCTTCAGCTCCACCACTCTCTTGGTCTAACAGGTTCAAGATTGTCCTAGGGACAGCCAAAGGACTAGCATATTTACACCACTCATTCCGCCCGCCAATCGTACACTACAATCTCAAGCCAAGCAACATCTTGCTCGACGAAAACTTCAACCCGAAGATCTCCGACTACGGGCTGGCAAGACTGCTAACAAAGCTTGACAAGCACGTCGTGAACAACAGATTCCAAAGTGCATTAGGGTACGTTGCACCAGAGCTAGCATGCCAGAGCATACGAGTGAACGAAAAATGCGACGTGCACGGATTCGGGGTGATGATTCTGGAGATCGTGACAGGACGAAGGCCAGTGGAGTATGGAGAAGACAATGTGGTTATATTGACAGACCATGTGAGGTATCTGCTAGAAAGGGGAAATGTGTTGGATTGTGTTGATCAAAGCATGAGTGAATATTCAGAAGATGAAGTGGTGCCCATTCTAAAACTGGCTTTGGTATGCACTTCTCAAATACCTTCAAGCAGGCCTTCAATGGCGGAAGTGGTACAGATTCTGCAAGTTATCAAGGCTCCAGTTCCTCAAAGAATAGAACCTTTTTGA 3051 44.77 MNLNPKPNPHMASLSFLALSLSMAFLLHSSTAINGVSPQLNDDILGLIVFKSDLHDPFSSLSSWNEDDDSPCSWSFVKCNPNNGRVSEISIDGLNLSGRIGRGLEKLQHLKVLSISRNNFTGNVNPQLVLPSSLERVNFSWNGFSGRIPTGFIDMSSVRFVDFSNNLFSGPVGDDLFMNCSSLHYLNLASNLLQGSVPNTMPTRCLYLNTLNISNNQFSGGLDFGALTRLRTLDLSNNAISGLFPQGISTIHNLKELKLQGNQFSGSLPADLGLCLHLSTFDVSQNRLAGPLPESMRLLTSLTLFNIGFNAFSGEFPQWIGNMTSLEYVDFSSNGFTGSLPLAMGGLKSVKYISFSNNKLSGNIPETWKDCSMLSVIKLEGNSFNGGLPEGVFGLGLEEMDLSRNELIGSIPAGSSKLYEKLTRMDLSRNRLEGNFPAEMGLYRNLRYLNLSWNKFKAEIPPEMGMFEKLSVLDMRSSELHGSIPGELCDSGSLGIVQLDGNSLIGSIPDEIGNCLSLYLLSLSHNNLSGPIPKSISKLSKLEILRLESNQLNGEIPQELGVLQNLLAVNISFNMLTGRLPVGGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPNQMGGQSTRNKPSEYSNPSHHVFFSISAIVAISAATMIAIGVLVITLLNVSARRRSLAFVDNALESMCSSSSKSGTVTAGKLMLFDSNSSSSPNWVSDHEALLNKASEIGAGFFGTVYKVSLGDQEWRDVAIKKLVESNMIQNPEDFDCEIRILGKVKHPNLIGLKGYYWTVQTQLLLMEYATNGSLQTQLHGRLPSAPPLSWSNRFKIVLGTAKGLAYLHHSFRPPIVHYNLKPSNILLDENFNPKISDYGLARLLTKLDKHVVNNRFQSALGYVAPELACQSIRVNEKCDVHGFGVMILEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDQSMSEYSEDEVVPILKLALVCTSQIPSSRPSMAEVVQILQVIKAPVPQRIEPF 1016
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 47616987 47622013 - Sed0020531.1 Sed02g1025 704693
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1025 1016 ProSitePatterns Protein kinases ATP-binding region signature. 734 759 IPR017441 GO:0005524(InterPro)
Sed02g1025 1016 Gene3D Phosphorylase Kinase; domain 1 714 806 - -
Sed02g1025 1016 SUPERFAMILY Protein kinase-like (PK-like) 731 1006 IPR011009 -
Sed02g1025 1016 FunFam Inactive leucine-rich repeat receptor-like protein kinase 221 318 - -
Sed02g1025 1016 Pfam Leucine rich repeat N-terminal domain 40 80 IPR013210 -
Sed02g1025 1016 FunFam Inactive leucine-rich repeat receptor-like protein kinase 319 612 - -
Sed02g1025 1016 Gene3D Transferase(Phosphotransferase) domain 1 808 1012 - -
Sed02g1025 1016 SUPERFAMILY L domain-like 321 591 - -
Sed02g1025 1016 PANTHER OS05G0588300 PROTEIN 299 415 IPR050994 -
Sed02g1025 1016 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 807 1011 - -
Sed02g1025 1016 SMART LRR_typ_2 251 275 IPR003591 -
Sed02g1025 1016 SMART LRR_typ_2 227 250 IPR003591 -
Sed02g1025 1016 SMART LRR_typ_2 443 467 IPR003591 -
Sed02g1025 1016 SMART LRR_typ_2 539 563 IPR003591 -
Sed02g1025 1016 Pfam Protein kinase domain 730 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1025 1016 FunFam Leucine-rich repeat receptor-like protein kinase 40 199 - -
Sed02g1025 1016 Gene3D Ribonuclease Inhibitor 205 298 IPR032675 -
Sed02g1025 1016 Gene3D Ribonuclease Inhibitor 41 204 IPR032675 -
Sed02g1025 1016 SUPERFAMILY L domain-like 54 388 - -
Sed02g1025 1016 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515(InterPro)
Sed02g1025 1016 CDD STKc_IRAK 734 1003 - -
Sed02g1025 1016 Pfam Leucine Rich Repeat 517 539 IPR001611 GO:0005515(InterPro)
Sed02g1025 1016 Pfam Leucine Rich Repeat 350 370 IPR001611 GO:0005515(InterPro)
Sed02g1025 1016 Pfam Leucine Rich Repeat 253 273 IPR001611 GO:0005515(InterPro)
Sed02g1025 1016 Pfam Leucine Rich Repeat 541 562 IPR001611 GO:0005515(InterPro)
Sed02g1025 1016 Pfam Leucine Rich Repeat 229 249 IPR001611 GO:0005515(InterPro)
Sed02g1025 1016 Pfam Leucine Rich Repeat 325 347 IPR001611 GO:0005515(InterPro)
Sed02g1025 1016 ProSiteProfiles Protein kinase domain profile. 728 1016 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1025 1016 Gene3D Ribonuclease Inhibitor 299 615 IPR032675 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1025 Sed-Chr2:47616987 Sed04g1099 Sed-Chr4:20423064 2.20E-22 dispersed
Sed02g1025 Sed-Chr2:47616987 Sed03g0337 Sed-Chr3:2012507 6.20E-25 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78810 PF00069 Pkinase 4.70E-40 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1025 - - - 0.0