Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1025 | ATGAATCTCAATCCCAAACCAAATCCACACATGGCTTCCCTCTCATTCCTCGCCCTTTCCCTTTCCATGGCGTTTCTTCTCCACAGCTCCACAGCCATCAATGGCGTTTCCCCTCAGCTCAACGACGACATTCTCGGCTTAATCGTCTTCAAATCCGACCTCCACGACCCCTTTTCATCTCTCTCATCGTGGAACGAAGACGACGACTCCCCTTGTTCTTGGAGCTTCGTGAAATGCAACCCCAACAACGGCAGAGTTTCTGAAATTTCCATTGATGGGTTGAACTTATCTGGGCGAATCGGACGAGGGCTTGAGAAGTTGCAGCATCTTAAGGTATTGTCCATTTCTCGCAATAATTTTACTGGCAATGTGAACCCTCAGCTTGTTCTTCCGTCTAGTCTCGAGAGGGTTAATTTTAGTTGGAATGGTTTCTCTGGACGAATCCCTACCGGTTTTATCGATATGTCGTCTGTTAGATTTGTTGATTTTTCGAATAATTTGTTCTCTGGACCTGTTGGTGATGATTTGTTTATGAACTGTTCTTCGCTTCATTACCTTAATCTTGCGTCTAATTTGCTTCAAGGTTCTGTCCCTAATACAATGCCCACAAGGTGTTTGTATTTAAACACACTCAATATTTCCAATAATCAGTTCTCTGGTGGGTTGGATTTTGGAGCTTTGACGAGGTTGAGGACATTGGATCTCTCTAACAATGCCATTTCTGGACTTTTCCCACAAGGGATTTCCACCATTCATAATCTGAAAGAGCTTAAGTTGCAGGGCAATCAATTCTCAGGGTCTTTACCTGCAGATTTGGGGTTATGCCTCCACTTATCTACCTTCGACGTGAGCCAAAATCGCCTCGCGGGACCGTTACCGGAGTCGATGAGGCTCCTAACTTCACTGACCCTTTTCAACATAGGATTCAATGCTTTCTCAGGGGAGTTCCCACAATGGATTGGGAACATGACAAGTTTGGAGTATGTGGATTTCTCAAGCAATGGCTTCACTGGAAGCCTTCCATTGGCAATGGGTGGGTTGAAATCTGTCAAATACATTAGTTTTTCAAACAACAAGCTCTCTGGGAACATCCCTGAGACATGGAAGGATTGTTCAATGCTGTCTGTGATAAAGCTTGAAGGGAACAGCTTCAATGGGGGGCTGCCAGAGGGGGTGTTTGGATTGGGTTTGGAGGAGATGGATTTGTCTAGGAATGAGCTGATTGGTTCAATCCCAGCAGGGTCAAGCAAACTGTATGAGAAGCTGACAAGGATGGACTTGTCAAGGAACAGATTAGAAGGGAACTTTCCAGCAGAAATGGGATTGTATAGAAATTTGAGGTACTTGAATCTGTCATGGAACAAGTTTAAGGCAGAGATTCCACCAGAAATGGGGATGTTTGAGAAGTTGAGTGTGTTGGACATGAGAAGCAGTGAGTTACATGGATCAATTCCTGGAGAGTTGTGTGATTCTGGGAGTTTGGGGATTGTTCAGCTTGATGGAAACTCATTGATTGGTTCAATTCCTGATGAGATTGGAAACTGTCTCTCACTTTACTTGCTGAGCTTGTCCCACAACAATTTAAGTGGACCAATTCCAAAGTCAATCTCCAAGCTAAGCAAGTTAGAGATTCTAAGACTAGAATCAAATCAATTAAATGGAGAAATACCCCAAGAGCTTGGAGTTCTTCAAAATCTCCTTGCTGTTAACATTTCATTCAATATGCTCACAGGCAGGCTCCCTGTTGGTGGCATTTTTCCAAGCTTAGATCAAAGTGCTTTGCAAGGAAACTTAGGGCTTTGCTCCCCTTTGCTTAAAGGCCCTTGCAAAATGAATGTCCCTAAGCCCCTTGTTCTTGACCCCAATGCCTATCCCAACCAAATGGGAGGCCAAAGCACCAGAAACAAACCTTCTGAATACTCTAATCCTTCCCATCATGTGTTCTTCAGTATCTCTGCCATTGTTGCCATTTCTGCTGCCACAATGATTGCCATTGGAGTGCTTGTTATTACCTTGTTGAATGTGTCAGCTCGCAGGAGATCACTCGCGTTTGTCGACAATGCCTTGGAAAGCATGTGCTCGAGCTCTTCGAAGTCTGGGACTGTGACTGCTGGTAAGCTTATGTTGTTTGATTCGAACTCGAGTTCCTCGCCAAACTGGGTTAGTGACCATGAAGCCTTGCTGAATAAGGCCTCTGAGATTGGTGCTGGATTTTTTGGAACTGTTTATAAGGTTTCATTGGGGGATCAAGAATGGAGAGATGTGGCTATCAAGAAGCTTGTGGAGTCAAACATGATCCAAAATCCTGAAGATTTTGACTGCGAAATTCGAATCTTGGGGAAGGTCAAGCACCCGAATTTGATCGGCTTAAAGGGGTACTACTGGACTGTTCAAACTCAGCTCTTGCTAATGGAGTATGCTACCAATGGAAGTCTTCAAACTCAACTCCATGGAAGGCTACCTTCAGCTCCACCACTCTCTTGGTCTAACAGGTTCAAGATTGTCCTAGGGACAGCCAAAGGACTAGCATATTTACACCACTCATTCCGCCCGCCAATCGTACACTACAATCTCAAGCCAAGCAACATCTTGCTCGACGAAAACTTCAACCCGAAGATCTCCGACTACGGGCTGGCAAGACTGCTAACAAAGCTTGACAAGCACGTCGTGAACAACAGATTCCAAAGTGCATTAGGGTACGTTGCACCAGAGCTAGCATGCCAGAGCATACGAGTGAACGAAAAATGCGACGTGCACGGATTCGGGGTGATGATTCTGGAGATCGTGACAGGACGAAGGCCAGTGGAGTATGGAGAAGACAATGTGGTTATATTGACAGACCATGTGAGGTATCTGCTAGAAAGGGGAAATGTGTTGGATTGTGTTGATCAAAGCATGAGTGAATATTCAGAAGATGAAGTGGTGCCCATTCTAAAACTGGCTTTGGTATGCACTTCTCAAATACCTTCAAGCAGGCCTTCAATGGCGGAAGTGGTACAGATTCTGCAAGTTATCAAGGCTCCAGTTCCTCAAAGAATAGAACCTTTTTGA | 3051 | 44.77 | MNLNPKPNPHMASLSFLALSLSMAFLLHSSTAINGVSPQLNDDILGLIVFKSDLHDPFSSLSSWNEDDDSPCSWSFVKCNPNNGRVSEISIDGLNLSGRIGRGLEKLQHLKVLSISRNNFTGNVNPQLVLPSSLERVNFSWNGFSGRIPTGFIDMSSVRFVDFSNNLFSGPVGDDLFMNCSSLHYLNLASNLLQGSVPNTMPTRCLYLNTLNISNNQFSGGLDFGALTRLRTLDLSNNAISGLFPQGISTIHNLKELKLQGNQFSGSLPADLGLCLHLSTFDVSQNRLAGPLPESMRLLTSLTLFNIGFNAFSGEFPQWIGNMTSLEYVDFSSNGFTGSLPLAMGGLKSVKYISFSNNKLSGNIPETWKDCSMLSVIKLEGNSFNGGLPEGVFGLGLEEMDLSRNELIGSIPAGSSKLYEKLTRMDLSRNRLEGNFPAEMGLYRNLRYLNLSWNKFKAEIPPEMGMFEKLSVLDMRSSELHGSIPGELCDSGSLGIVQLDGNSLIGSIPDEIGNCLSLYLLSLSHNNLSGPIPKSISKLSKLEILRLESNQLNGEIPQELGVLQNLLAVNISFNMLTGRLPVGGIFPSLDQSALQGNLGLCSPLLKGPCKMNVPKPLVLDPNAYPNQMGGQSTRNKPSEYSNPSHHVFFSISAIVAISAATMIAIGVLVITLLNVSARRRSLAFVDNALESMCSSSSKSGTVTAGKLMLFDSNSSSSPNWVSDHEALLNKASEIGAGFFGTVYKVSLGDQEWRDVAIKKLVESNMIQNPEDFDCEIRILGKVKHPNLIGLKGYYWTVQTQLLLMEYATNGSLQTQLHGRLPSAPPLSWSNRFKIVLGTAKGLAYLHHSFRPPIVHYNLKPSNILLDENFNPKISDYGLARLLTKLDKHVVNNRFQSALGYVAPELACQSIRVNEKCDVHGFGVMILEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLDCVDQSMSEYSEDEVVPILKLALVCTSQIPSSRPSMAEVVQILQVIKAPVPQRIEPF | 1016 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 47616987 | 47622013 | - | Sed0020531.1 | Sed02g1025 | 704693 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1025 | 1016 | ProSitePatterns | Protein kinases ATP-binding region signature. | 734 | 759 | IPR017441 | GO:0005524(InterPro) | |
Sed02g1025 | 1016 | Gene3D | Phosphorylase Kinase; domain 1 | 714 | 806 | - | - | |
Sed02g1025 | 1016 | SUPERFAMILY | Protein kinase-like (PK-like) | 731 | 1006 | IPR011009 | - | |
Sed02g1025 | 1016 | FunFam | Inactive leucine-rich repeat receptor-like protein kinase | 221 | 318 | - | - | |
Sed02g1025 | 1016 | Pfam | Leucine rich repeat N-terminal domain | 40 | 80 | IPR013210 | - | |
Sed02g1025 | 1016 | FunFam | Inactive leucine-rich repeat receptor-like protein kinase | 319 | 612 | - | - | |
Sed02g1025 | 1016 | Gene3D | Transferase(Phosphotransferase) domain 1 | 808 | 1012 | - | - | |
Sed02g1025 | 1016 | SUPERFAMILY | L domain-like | 321 | 591 | - | - | |
Sed02g1025 | 1016 | PANTHER | OS05G0588300 PROTEIN | 299 | 415 | IPR050994 | - | |
Sed02g1025 | 1016 | FunFam | probable LRR receptor-like serine/threonine-protein kinase IRK | 807 | 1011 | - | - | |
Sed02g1025 | 1016 | SMART | LRR_typ_2 | 251 | 275 | IPR003591 | - | |
Sed02g1025 | 1016 | SMART | LRR_typ_2 | 227 | 250 | IPR003591 | - | |
Sed02g1025 | 1016 | SMART | LRR_typ_2 | 443 | 467 | IPR003591 | - | |
Sed02g1025 | 1016 | SMART | LRR_typ_2 | 539 | 563 | IPR003591 | - | |
Sed02g1025 | 1016 | Pfam | Protein kinase domain | 730 | 1000 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1025 | 1016 | FunFam | Leucine-rich repeat receptor-like protein kinase | 40 | 199 | - | - | |
Sed02g1025 | 1016 | Gene3D | Ribonuclease Inhibitor | 205 | 298 | IPR032675 | - | |
Sed02g1025 | 1016 | Gene3D | Ribonuclease Inhibitor | 41 | 204 | IPR032675 | - | |
Sed02g1025 | 1016 | SUPERFAMILY | L domain-like | 54 | 388 | - | - | |
Sed02g1025 | 1016 | Pfam | Leucine rich repeat | 397 | 456 | IPR001611 | GO:0005515(InterPro) | |
Sed02g1025 | 1016 | CDD | STKc_IRAK | 734 | 1003 | - | - | |
Sed02g1025 | 1016 | Pfam | Leucine Rich Repeat | 517 | 539 | IPR001611 | GO:0005515(InterPro) | |
Sed02g1025 | 1016 | Pfam | Leucine Rich Repeat | 350 | 370 | IPR001611 | GO:0005515(InterPro) | |
Sed02g1025 | 1016 | Pfam | Leucine Rich Repeat | 253 | 273 | IPR001611 | GO:0005515(InterPro) | |
Sed02g1025 | 1016 | Pfam | Leucine Rich Repeat | 541 | 562 | IPR001611 | GO:0005515(InterPro) | |
Sed02g1025 | 1016 | Pfam | Leucine Rich Repeat | 229 | 249 | IPR001611 | GO:0005515(InterPro) | |
Sed02g1025 | 1016 | Pfam | Leucine Rich Repeat | 325 | 347 | IPR001611 | GO:0005515(InterPro) | |
Sed02g1025 | 1016 | ProSiteProfiles | Protein kinase domain profile. | 728 | 1016 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1025 | 1016 | Gene3D | Ribonuclease Inhibitor | 299 | 615 | IPR032675 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1025 | Sed-Chr2:47616987 | Sed04g1099 | Sed-Chr4:20423064 | 2.20E-22 | dispersed | |
Sed02g1025 | Sed-Chr2:47616987 | Sed03g0337 | Sed-Chr3:2012507 | 6.20E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78810 | PF00069 | Pkinase | 4.70E-40 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1025 | - | - | - | 0.0 |