Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1027 ATGGCGGAATTTCTATGGACATTTGCCGCTCAAGAGCTCTTGAAGAAGACGGTGATGCTCGCAGCGGAGCAGATCGGCCTAGCCTGGGGTTTCAAGAAGGACCTCTCAAAGCTTCGCGACTCTTTGCTGCTGGTGGAAGCCATCCTTCGCGACGTCGACCGAGTCAAGGCCGAGCATCGAGCCGTCAAGCTATGGGTCGAGAAGCTCCAACAGATCGTGTTCGAAGCCGACGTTCTACTGGACGACCTCGCTTATGAAGATCTTCGACGCAGGGTGGAGAACGGTAAGGGATTGACGGTACGTAATCTCGCTTCGTCCTCGAATAATCCGGTTGTGTTTCGTTTCAAAATGGCTGGTAAAATCAAGCGTATAGGTAGATTATTGGAGACACATTATTCTGGTGCGGCGGCCGTGGGACTTGTTGCTGTTATGCGTAAAGAAATCGATCCGGATCTTGGCCAGATTCAAGAGACGGATTCGTTTCTCGATGAGTTTGGAGTGGTTGGGAGGGATGTTGAAGTTATGGAGATTGTGAATGCATGTGTTGATCTTAGTCATAGGAAATTAGGTTTGTCTGTTTTGCCCATTGTTGGGATGGGGGGATTGGGGAAAACAGCTTTGGCGAAAGTGATATTCAATCATGAACTGATTAAGGGGAGCTTTGATGGAACCATATGGGTGTGTGTTTCAAACCCTTTTGTTATTAAGAAGATTTTAAGAGCAGTTTTGGAAACTCTTAATCCTAATTTTGGTGGTTTAGATAGCAAGGAGGCCTTACTTGGAGAGCTTAAGAAAGTGTTGGATGACAAAAAGTATTTTCTTGTGCTTGATGATGTTTGGAATGAGAATGTTACATTGTGGAATGAGTTAAAGACTTGTTTGCTAAAGGTTTCTCAAAGATCTGGAAATGTTGTTGTTGTGACTGCTAGGAGTGAAGGAGTTGCTGAAATCATGGAGACGCATCCGAGACACCATTTGAGGAAATTATCGGATGAAGATTGTTTGTCTTTGTTTAAGAAATATGCATTTGGAAATGAATTCTTAATAGTTCCTGAGTTGGATGTGGTTAAGCAAAAGCTCCTTAAAAGATTTGGTGGCATTCCGTTGGTTGTAAAAGTGTTAGGAGGAATAGTGAAATTTGACGAGAATCATGAGGGATTGCTGTCGACTTTGGATAATCTAACTACAATTCCATTGACCGATGATGATCTCGTTTTATCCACGATAAAATTAAGTGTGGATCGCCTACCACTATCCTCGTTAAAACAATGCTTTGCCTATTGTTCTAATTTTCTTAAAGACTCCAAGTTTAGAAAAGATGCACTTGTTCAGACTTGGATAGCACAGGGATTTATTCAACCAGGCGAGGGAAGCAACGAAACGATGGAGGATTTAGGAGATAAGTACTTTAACATTTTGTTGTCTCGCTCTTTGTTTCAAGATGTCGTTAAAGATCATAGAGAGAGAACTATGTGGTGTAAAATGCACGATCTTATACACGATGTTGCATGTGCTATTTCAAATTCTCAAGAATTGAAACCGGTTTCTTTAGATGGATCTAGTCATAAAGTAAAAACACTTGATCGTAGGGAAAATACTACTAGAAAGTTGCACTTGTTGACATTTGATAGTGACGTGTTTCACAATAAAATCACGAACTTTATCTACTTGCGCGTTTTAGTTGCATATTCGTGGTTTATATGTGTGTTACCAAATTCAATAGGTAAGTTGAAGCATTTGAGGTACCTAGATATTTCATATTCTACCATAAGGGAGCTACCCGAATCTGCTACTTCGCTTTATAACTTGCAGACATTGAGGCTGGGAAGATATTTCCATGACCTTCCAAAGAATTTGAGAAAGTTGGTTAGTTTAAGACATTTGGAATTTGTTGCTGATCCTTATGATATGAAGCAAATGCCTCAACATTTGGGTCAACTGATTCAACTCCAAACATTGTCTAGTTTTGCGGTTGGGTTTGATGATGGATGTAAGATAGAAGAGCTTGGACCTTTGAAAAACCTTAAAGGAAAAGTAAACCTTTTATATCTCGAGCGAGTCAAAAGTAAAAAGGAAGCTCTAGCAGCAAATTTGGTGGAAAAGGAGAATATTTCGTATCTGTATTATCATTGGAGTTCGGAACGTGAAGGAGAAGTAAGCAATTACAATGATTTGAATGTATTGGAAGGACTTCAACCGCATAAAAATCTTCAAGCTTTGAAAATCCATAACTTTGCAGGAGAACACTTCCCTAGTGGTATTTTTGTTGAAAATTTGATCGAGATTTATCTGCAAGATTGTGAAATATGTGACACTTTACCTATGCTTGGGCAGTTATCCAAGCTTGAAGTACTTGAACTTCGCTGCTTACCTAGTGTAAGAAGCATTGGAGAAGAATTCTATGGGAATTATTGTGACAGCAGAACTTTATTCCCAAAATTGAAGACGTTTCATATCAGCGAAATGCACAGTCTCGAGAATTGGGAAGAAATAGAAATTGTATCGAATGGTAAAATCTTTCCCCATCTCGAAAGCTTGAAAATTGTTCTATGTCCAATATTAACTAGCATTCCAAACGTTTTTGCATTGCATCACGAGACTTTTGAAGTTGACGGGGTTATTACAAGGCTACTTCCAAGCTTTCAAGGATCATCAAAGCTTCGATTTCTAAAGATTTTGGGATGTGATAACTTAACAATGCTACCAAATGGCTTAGAATCATGCAGCTCTCTGGAAAACATGTTGGGTTTGAAAAGTTGCCAGAGGGGTTAG 2772 39.79 MAEFLWTFAAQELLKKTVMLAAEQIGLAWGFKKDLSKLRDSLLLVEAILRDVDRVKAEHRAVKLWVEKLQQIVFEADVLLDDLAYEDLRRRVENGKGLTVRNLASSSNNPVVFRFKMAGKIKRIGRLLETHYSGAAAVGLVAVMRKEIDPDLGQIQETDSFLDEFGVVGRDVEVMEIVNACVDLSHRKLGLSVLPIVGMGGLGKTALAKVIFNHELIKGSFDGTIWVCVSNPFVIKKILRAVLETLNPNFGGLDSKEALLGELKKVLDDKKYFLVLDDVWNENVTLWNELKTCLLKVSQRSGNVVVVTARSEGVAEIMETHPRHHLRKLSDEDCLSLFKKYAFGNEFLIVPELDVVKQKLLKRFGGIPLVVKVLGGIVKFDENHEGLLSTLDNLTTIPLTDDDLVLSTIKLSVDRLPLSSLKQCFAYCSNFLKDSKFRKDALVQTWIAQGFIQPGEGSNETMEDLGDKYFNILLSRSLFQDVVKDHRERTMWCKMHDLIHDVACAISNSQELKPVSLDGSSHKVKTLDRRENTTRKLHLLTFDSDVFHNKITNFIYLRVLVAYSWFICVLPNSIGKLKHLRYLDISYSTIRELPESATSLYNLQTLRLGRYFHDLPKNLRKLVSLRHLEFVADPYDMKQMPQHLGQLIQLQTLSSFAVGFDDGCKIEELGPLKNLKGKVNLLYLERVKSKKEALAANLVEKENISYLYYHWSSEREGEVSNYNDLNVLEGLQPHKNLQALKIHNFAGEHFPSGIFVENLIEIYLQDCEICDTLPMLGQLSKLEVLELRCLPSVRSIGEEFYGNYCDSRTLFPKLKTFHISEMHSLENWEEIEIVSNGKIFPHLESLKIVLCPILTSIPNVFALHHETFEVDGVITRLLPSFQGSSKLRFLKILGCDNLTMLPNGLESCSSLENMLGLKSCQRG 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47653193 47656779 + Sed0025891.1 Sed02g1027 704695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1027 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 428 IPR027417 -
Sed02g1027 923 PANTHER DISEASE RESISTANCE PROTEIN RP 24 907 IPR044974 GO:0006952(InterPro)|GO:0098542(PANTHER)
Sed02g1027 923 Gene3D Ribonuclease Inhibitor 517 922 IPR032675 -
Sed02g1027 923 Gene3D - 156 323 IPR027417 -
Sed02g1027 923 Pfam Rx N-terminal domain 11 96 IPR041118 -
Sed02g1027 923 Gene3D - 407 505 IPR036388 -
Sed02g1027 923 SUPERFAMILY L domain-like 494 913 - -
Sed02g1027 923 FunFam Probable disease resistance protein At1g61300 152 323 - -
Sed02g1027 923 FunFam Probable disease resistance protein At1g63360 413 505 - -
Sed02g1027 923 Gene3D - 9 121 - -
Sed02g1027 923 Coils Coil 684 704 - -
Sed02g1027 923 PRINTS Disease resistance protein signature 193 208 - -
Sed02g1027 923 PRINTS Disease resistance protein signature 575 591 - -
Sed02g1027 923 PRINTS Disease resistance protein signature 364 378 - -
Sed02g1027 923 PRINTS Disease resistance protein signature 266 280 - -
Sed02g1027 923 Pfam NB-ARC domain 188 413 IPR002182 GO:0043531(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1027 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1027 Sed-Chr2:47653193 Sed12g0648 Sed-Chr12:3865572 0.00E+00 dispersed
Sed02g1078 Sed-Chr2:48116849 Sed02g1027 Sed-Chr2:47653193 1.30E-223 transposed
Sed04g2670 Sed-Chr4:39128319 Sed02g1027 Sed-Chr2:47653193 9.10E-227 transposed
Sed07g1377 Sed-Chr7:10449087 Sed02g1027 Sed-Chr2:47653193 1.80E-10 transposed
Sed13g1348 Sed-Chr13:18976876 Sed02g1027 Sed-Chr2:47653193 7.90E-43 transposed
Sed12g0647 Sed-Chr12:3859403 Sed02g1027 Sed-Chr2:47653193 3.50E-305 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1249 . . . . . . . . . . . . . . Sed02g1027 . . Bhi01g02658 Tan10g1276 Cmetu07g1550 . . . Lcy11g1190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000049 1 17 1 1 1 9 0 11 8 28 9 10 9 18 20 10 9 0 0 9 17 7 7 28 33 20 21 14 7 0 325