Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1052 ATGGCTACCGTTCCGATGAGGATTGTCTTCGGTCTCCTAACCTTCGTCACCGTCGGCATGGTCATTGGTGCTTTGGTTCAATTAGCATTTATAAGAAGGCTGGAGGACTCTGTTGGCACAGAGTTTCTATCAGCTGGAAGGTTACGTAAAACTCAGTATGATGGCCAACGTCATTTATCCTTAGGGCTTCCTAATTGGATGAACGACAAAGAAGCAGAGATTCTTCGTCTTGGCTATGTTAAACCAGAAGTAGTTAGCTGGTCACCTCGAATCATTGTTTTGCATAATTTTTTGAGCTCAGAGGAGTGTGACTATCTTAAGGCAATGGCACTTCCTCGCCTTGAAATTTCTACTGTCGTGGATACAAAAACAGGGAAGGGAATTAAGAGTGATTTTAGAACGAGCTCTGGAATGTTTTTAAGCCATCAAGAGAGAAACTATCCAATGATCCAGGCAATTGAAAAACGGATATCTGTCTATTCTCAAATACCAATAGAAAATGGAGAGCTCGTTCAAGTATTAAGGTACGAGAAGAATCAATTTTACAAGCCTCATCATGATTACTTTTCTGATACTTTTAACTTGAAGCGTGGTGGTCAGCGAGTAGCAACCATGCTTATGTATCTAACTGACAACGTTGAGGGTGGAGAAACTTACTTTCCGAAGGCTGGTTCTGGCGAGTGTAGTTGTGGCGGGAAAACCGTCCCAGGTTTATCGGTCAAACCAGTCAAAGGAGATGCAGTGCTTTTTTGGAGCATGGGATTGGATGGACAGTCGGATCCTAAAAGCATTCATGGAGGATGTGAAGTTCTGGGAGGCGAAAAATGGTCTGCCACAAAATGGATGAGGCAAAAGAGTACTCTGGTACCTTGA 873 43.07 MATVPMRIVFGLLTFVTVGMVIGALVQLAFIRRLEDSVGTEFLSAGRLRKTQYDGQRHLSLGLPNWMNDKEAEILRLGYVKPEVVSWSPRIIVLHNFLSSEECDYLKAMALPRLEISTVVDTKTGKGIKSDFRTSSGMFLSHQERNYPMIQAIEKRISVYSQIPIENGELVQVLRYEKNQFYKPHHDYFSDTFNLKRGGQRVATMLMYLTDNVEGGETYFPKAGSGECSCGGKTVPGLSVKPVKGDAVLFWSMGLDGQSDPKSIHGGCEVLGGEKWSATKWMRQKSTLVP 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47864173 47877978 - Sed0006717.1 Sed02g1052 704720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1052 290 SMART p4hc 89 283 IPR006620 GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0031418(InterPro)
Sed02g1052 290 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 167 284 IPR005123 -
Sed02g1052 290 Pfam 2OG-Fe(II) oxygenase superfamily 171 283 IPR044862 -
Sed02g1052 290 FunFam Prolyl 4-hydroxylase 1 82 283 - -
Sed02g1052 290 Gene3D q2cbj1_9rhob like domain 82 283 - -
Sed02g1052 290 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 78 285 IPR045054 GO:0004656(PANTHER)|GO:0005783(PANTHER)|GO:0018401(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1052 K00472 - - csv:101206818 535.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1052 Sed-Chr2:47864173 Sed10g1037 Sed-Chr10:9135802 7.10E-59 dispersed
Sed02g1052 Sed-Chr2:47864173 Sed10g1036 Sed-Chr10:9135802 7.10E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1099 . . . . . Bpe14g01050 . . . . Cma06g01625 . . . Sed02g1052 Cpe08g00102 Cpe03g01265 Bhi01g02618 Tan10g1227 Cmetu07g0599 . Hepe05g1285 . Lcy11g1242 . . . . . . . . . . Cone11ag0636 . . . . . Blo07g00195 . Bda13g00264 . Bpe13g00639 Bma02g00980 . . Cmo06g01621 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007865 1 2 0 1 1 1 2 1 2 1 1 1 2 1 1 3 1 1 2 1 1 1 1 0 2 1 1 1 1 1 36