Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1057 | ATGTCCAGCTCCCACGAATCTCCACCAGCGTTCGACCGGCCTCGCTCCGTCGTCAAGAAAATCCAGGCTAAACTCCAGCACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGACTGATTTGAAGAATCTCGATCCATTTCTCATGCTCGATGATTTCTCTGTTACTCCGCCGGCTGGATTCCCGGATCATCCTCACAGAGGTTTTGAGACAGTGACGTACATGTTACAAGGAGGAATTACCCATCAAGATTTTGCTGGCCACAAGGGCACAATCAGAACAGGGGATGTACAGTGGATGACAGCAGGAAGAGGAATTATCCATTCTGAAATGCCTGCTGGTGAAGGATCTCAAAAGGGTTTGCAGCTTTGGATCAATCTTGCATCTCATGACAAAATGATGGAACCAAGGTATCAAGAGATTCCAAGCGACAACATTCCTCAAGCAGAAAATGACGGTGTCGAAGTTCGAGTTATAGCGGGAGAATCAATGGGAGTGAGTTCTCCAATCTACACTCAGACTCCAACAATGTACCTCGACTTCACATTGAAACCAAGAGCTCAAGTGCATCAAAGCATCCCAGACACGTGGACCTCGTTCGTGTACATTATCGACGGAGAAGGGGTGTTCGGGTCCTCGAGCTCGTCCCGGGTGGCCGCTCACCATGTTCTAGTACTAGGACCCGGAGATGGGTTAAGTGTGTGGAACAGATCTTCAAAGCCATTGAGGTTTGTTTTGATAGCAGGGCAGCCATTGAATGAACCAATTGTGCAATATGGACCTTTTGTGATGAACTCACAATCTGAAATTGACCAAGCAATTGAGGACTATCACTATGCCAAAAATGGGTTTGAAATGGCAAAACATTGGAGATCTCAATGA | 888 | 47.86 | MSSSHESPPAFDRPRSVVKKIQAKLQHEGDGAVVRRGIGRTDLKNLDPFLMLDDFSVTPPAGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLASHDKMMEPRYQEIPSDNIPQAENDGVEVRVIAGESMGVSSPIYTQTPTMYLDFTLKPRAQVHQSIPDTWTSFVYIIDGEGVFGSSSSSRVAAHHVLVLGPGDGLSVWNRSSKPLRFVLIAGQPLNEPIVQYGPFVMNSQSEIDQAIEDYHYAKNGFEMAKHWRSQ | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 47931084 | 47933458 | + | Sed0010853.1 | Sed02g1057 | 704725 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1057 | 295 | SUPERFAMILY | RmlC-like cupins | 16 | 293 | IPR011051 | - | |
Sed02g1057 | 295 | CDD | cupin_pirin_C | 177 | 253 | - | - | |
Sed02g1057 | 295 | FunFam | pirin | 28 | 162 | - | - | |
Sed02g1057 | 295 | Pfam | Pirin | 34 | 127 | IPR003829 | - | |
Sed02g1057 | 295 | PANTHER | PIRIN-RELATED | 7 | 295 | IPR012093 | - | |
Sed02g1057 | 295 | CDD | cupin_pirin_N | 32 | 129 | - | - | |
Sed02g1057 | 295 | PIRSF | Pirin | 13 | 293 | IPR012093 | - | |
Sed02g1057 | 295 | Gene3D | Jelly Rolls | 149 | 254 | IPR014710 | - | |
Sed02g1057 | 295 | Gene3D | Jelly Rolls | 28 | 280 | IPR014710 | - | |
Sed02g1057 | 295 | Pfam | Pirin C-terminal cupin domain | 180 | 284 | IPR008778 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1057 | Sed-Chr2:47931084 | Sed07g2718 | Sed-Chr7:42384795 | 1.20E-119 | dispersed | |
Sed12g0676 | Sed-Chr12:4047754 | Sed02g1057 | Sed-Chr2:47931084 | 5.00E-162 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1057 | K06911 | - | csv:101205861 | 569.696 |