Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1057 ATGTCCAGCTCCCACGAATCTCCACCAGCGTTCGACCGGCCTCGCTCCGTCGTCAAGAAAATCCAGGCTAAACTCCAGCACGAAGGCGACGGCGCCGTCGTTCGTCGAGGCATCGGAAGGACTGATTTGAAGAATCTCGATCCATTTCTCATGCTCGATGATTTCTCTGTTACTCCGCCGGCTGGATTCCCGGATCATCCTCACAGAGGTTTTGAGACAGTGACGTACATGTTACAAGGAGGAATTACCCATCAAGATTTTGCTGGCCACAAGGGCACAATCAGAACAGGGGATGTACAGTGGATGACAGCAGGAAGAGGAATTATCCATTCTGAAATGCCTGCTGGTGAAGGATCTCAAAAGGGTTTGCAGCTTTGGATCAATCTTGCATCTCATGACAAAATGATGGAACCAAGGTATCAAGAGATTCCAAGCGACAACATTCCTCAAGCAGAAAATGACGGTGTCGAAGTTCGAGTTATAGCGGGAGAATCAATGGGAGTGAGTTCTCCAATCTACACTCAGACTCCAACAATGTACCTCGACTTCACATTGAAACCAAGAGCTCAAGTGCATCAAAGCATCCCAGACACGTGGACCTCGTTCGTGTACATTATCGACGGAGAAGGGGTGTTCGGGTCCTCGAGCTCGTCCCGGGTGGCCGCTCACCATGTTCTAGTACTAGGACCCGGAGATGGGTTAAGTGTGTGGAACAGATCTTCAAAGCCATTGAGGTTTGTTTTGATAGCAGGGCAGCCATTGAATGAACCAATTGTGCAATATGGACCTTTTGTGATGAACTCACAATCTGAAATTGACCAAGCAATTGAGGACTATCACTATGCCAAAAATGGGTTTGAAATGGCAAAACATTGGAGATCTCAATGA 888 47.86 MSSSHESPPAFDRPRSVVKKIQAKLQHEGDGAVVRRGIGRTDLKNLDPFLMLDDFSVTPPAGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAGEGSQKGLQLWINLASHDKMMEPRYQEIPSDNIPQAENDGVEVRVIAGESMGVSSPIYTQTPTMYLDFTLKPRAQVHQSIPDTWTSFVYIIDGEGVFGSSSSSRVAAHHVLVLGPGDGLSVWNRSSKPLRFVLIAGQPLNEPIVQYGPFVMNSQSEIDQAIEDYHYAKNGFEMAKHWRSQ 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47931084 47933458 + Sed0010853.1 Sed02g1057 704725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1057 295 SUPERFAMILY RmlC-like cupins 16 293 IPR011051 -
Sed02g1057 295 CDD cupin_pirin_C 177 253 - -
Sed02g1057 295 FunFam pirin 28 162 - -
Sed02g1057 295 Pfam Pirin 34 127 IPR003829 -
Sed02g1057 295 PANTHER PIRIN-RELATED 7 295 IPR012093 -
Sed02g1057 295 CDD cupin_pirin_N 32 129 - -
Sed02g1057 295 PIRSF Pirin 13 293 IPR012093 -
Sed02g1057 295 Gene3D Jelly Rolls 149 254 IPR014710 -
Sed02g1057 295 Gene3D Jelly Rolls 28 280 IPR014710 -
Sed02g1057 295 Pfam Pirin C-terminal cupin domain 180 284 IPR008778 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1057 Sed-Chr2:47931084 Sed07g2718 Sed-Chr7:42384795 1.20E-119 dispersed
Sed12g0676 Sed-Chr12:4047754 Sed02g1057 Sed-Chr2:47931084 5.00E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1057 K06911 - csv:101205861 569.696