Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1059 ATGTACCAATCCACTTCCTCTCCTTCTTCCTCACAGAAATCCATGTCCTCCGCCAACGCCGGCGTCGGAGCCCCCGGCACCGGCGGCGGCGGAGGTCTCACCCGCTACGGCTCCGCACCTGGGTCTTTGCTCACATCCGCGGTGGATTCAGTGATTGGTAATCGGCAGCCGGACTCCGCGGCGCCCTTCCTTTCGCCGCCGTCGTTCGCCGGCAACTACTTCTCAACCGCCGAATCCTCCGTCGTGGATTCCTCTCAGAAGGCCGTTCAATCGCCGGCGGCTGCGGCGGCCTTGCACCGGTCGTACGGACTCCACGATTTGGCGCTTGGGGATTACTCGACGGCGAGAAATGGTGGGCAATCGTCTTCCTCATCGCCGCTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCAGCCATCTCTCCGGCGGCCCCGAAGGAACCGGAGGATTTTCATTGACAAGGGGAGGTGGAGGAGGAGGAGGAATAGGAAGGCTGAAGGCACAGCTGAGCTTCAACAATGGTGGACATGACAATAATAATTCTCAATTCTCAGAAATGATGAATGAAAGTAATGTTGTTGAAGGTGGTGTTAACAACAATACTAATGGGCTCACTAGTTTTGGTATGGACTCTAATTGGGACACCTCCAATTCTAACAACATTGCCTTTGGTCACCCTCATGCTAAGAGATCTAAGCACCATTCTGATGGAGATCACTTCTTCAATACTCTTGAATCCCAGTTTAGCCTGCCGCAGACAAGTCTGGAAATGGCAACTGTGGAGAGGCTGCTTCAAATTCCAGAAGACTCTGTTCCTTGTAAGATCCGAGCCAAGCGCGGTTGCGCCACGCACCCTCGTAGCATTGCCGAGAGGGAGAGAAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGACCTTGTTCCTAACATGGATAAGCAAACAAGCTATTCAGACATGTTGGACTTAGCAGTGCAGCATATCAAAGGCCTACAAAATCAAATTCAGAAACTTAACAAAGAAAGTGAGAATTGCACATGCGGAAGTAGAGAATGCTCATAA 1065 51.83 MYQSTSSPSSSQKSMSSANAGVGAPGTGGGGGLTRYGSAPGSLLTSAVDSVIGNRQPDSAAPFLSPPSFAGNYFSTAESSVVDSSQKAVQSPAAAAALHRSYGLHDLALGDYSTARNGGQSSSSSPLVRQRSSPAGFLSHLSGGPEGTGGFSLTRGGGGGGGIGRLKAQLSFNNGGHDNNNSQFSEMMNESNVVEGGVNNNTNGLTSFGMDSNWDTSNSNNIAFGHPHAKRSKHHSDGDHFFNTLESQFSLPQTSLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKESENCTCGSRECS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47947712 47953261 - Sed0001362.1 Sed02g1059 704727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1059 354 MobiDBLite consensus disorder prediction 1 21 - -
Sed02g1059 354 Gene3D - 283 350 IPR036638 GO:0046983(InterPro)
Sed02g1059 354 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 87 343 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed02g1059 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 285 345 IPR036638 GO:0046983(InterPro)
Sed02g1059 354 MobiDBLite consensus disorder prediction 1 39 - -
Sed02g1059 354 MobiDBLite consensus disorder prediction 115 167 - -
Sed02g1059 354 FunFam Transcription factor bHLH130 family 283 351 - -
Sed02g1059 354 MobiDBLite consensus disorder prediction 115 137 - -
Sed02g1059 354 CDD bHLH_AtbHLH_like 287 339 IPR045239 -
Sed02g1059 354 SMART finulus 288 338 IPR011598 GO:0046983(InterPro)
Sed02g1059 354 Pfam Helix-loop-helix DNA-binding domain 288 333 IPR011598 GO:0046983(InterPro)
Sed02g1059 354 Coils Coil 322 349 - -
Sed02g1059 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 332 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1059 Sed-Chr2:47947712 Sed12g1587 Sed-Chr12:26028822 1.10E-29 dispersed
Sed02g1059 Sed-Chr2:47947712 Sed12g1270 Sed-Chr12:9189357 4.20E-29 transposed
Sed02g1059 Sed-Chr2:47947712 Sed02g0333 Sed-Chr2:39748139 4.20E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37591 PF00010 HLH 1.10E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1059 - - - 0.0