Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1059 | ATGTACCAATCCACTTCCTCTCCTTCTTCCTCACAGAAATCCATGTCCTCCGCCAACGCCGGCGTCGGAGCCCCCGGCACCGGCGGCGGCGGAGGTCTCACCCGCTACGGCTCCGCACCTGGGTCTTTGCTCACATCCGCGGTGGATTCAGTGATTGGTAATCGGCAGCCGGACTCCGCGGCGCCCTTCCTTTCGCCGCCGTCGTTCGCCGGCAACTACTTCTCAACCGCCGAATCCTCCGTCGTGGATTCCTCTCAGAAGGCCGTTCAATCGCCGGCGGCTGCGGCGGCCTTGCACCGGTCGTACGGACTCCACGATTTGGCGCTTGGGGATTACTCGACGGCGAGAAATGGTGGGCAATCGTCTTCCTCATCGCCGCTGGTTCGCCAGAGAAGCTCGCCGGCTGGATTTCTCAGCCATCTCTCCGGCGGCCCCGAAGGAACCGGAGGATTTTCATTGACAAGGGGAGGTGGAGGAGGAGGAGGAATAGGAAGGCTGAAGGCACAGCTGAGCTTCAACAATGGTGGACATGACAATAATAATTCTCAATTCTCAGAAATGATGAATGAAAGTAATGTTGTTGAAGGTGGTGTTAACAACAATACTAATGGGCTCACTAGTTTTGGTATGGACTCTAATTGGGACACCTCCAATTCTAACAACATTGCCTTTGGTCACCCTCATGCTAAGAGATCTAAGCACCATTCTGATGGAGATCACTTCTTCAATACTCTTGAATCCCAGTTTAGCCTGCCGCAGACAAGTCTGGAAATGGCAACTGTGGAGAGGCTGCTTCAAATTCCAGAAGACTCTGTTCCTTGTAAGATCCGAGCCAAGCGCGGTTGCGCCACGCACCCTCGTAGCATTGCCGAGAGGGAGAGAAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGACCTTGTTCCTAACATGGATAAGCAAACAAGCTATTCAGACATGTTGGACTTAGCAGTGCAGCATATCAAAGGCCTACAAAATCAAATTCAGAAACTTAACAAAGAAAGTGAGAATTGCACATGCGGAAGTAGAGAATGCTCATAA | 1065 | 51.83 | MYQSTSSPSSSQKSMSSANAGVGAPGTGGGGGLTRYGSAPGSLLTSAVDSVIGNRQPDSAAPFLSPPSFAGNYFSTAESSVVDSSQKAVQSPAAAAALHRSYGLHDLALGDYSTARNGGQSSSSSPLVRQRSSPAGFLSHLSGGPEGTGGFSLTRGGGGGGGIGRLKAQLSFNNGGHDNNNSQFSEMMNESNVVEGGVNNNTNGLTSFGMDSNWDTSNSNNIAFGHPHAKRSKHHSDGDHFFNTLESQFSLPQTSLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQIQKLNKESENCTCGSRECS | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 47947712 | 47953261 | - | Sed0001362.1 | Sed02g1059 | 704727 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1059 | 354 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed02g1059 | 354 | Gene3D | - | 283 | 350 | IPR036638 | GO:0046983(InterPro) | |
Sed02g1059 | 354 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 87 | 343 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) | |
Sed02g1059 | 354 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 285 | 345 | IPR036638 | GO:0046983(InterPro) | |
Sed02g1059 | 354 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Sed02g1059 | 354 | MobiDBLite | consensus disorder prediction | 115 | 167 | - | - | |
Sed02g1059 | 354 | FunFam | Transcription factor bHLH130 family | 283 | 351 | - | - | |
Sed02g1059 | 354 | MobiDBLite | consensus disorder prediction | 115 | 137 | - | - | |
Sed02g1059 | 354 | CDD | bHLH_AtbHLH_like | 287 | 339 | IPR045239 | - | |
Sed02g1059 | 354 | SMART | finulus | 288 | 338 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1059 | 354 | Pfam | Helix-loop-helix DNA-binding domain | 288 | 333 | IPR011598 | GO:0046983(InterPro) | |
Sed02g1059 | 354 | Coils | Coil | 322 | 349 | - | - | |
Sed02g1059 | 354 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 282 | 332 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1059 | Sed-Chr2:47947712 | Sed12g1587 | Sed-Chr12:26028822 | 1.10E-29 | dispersed | |
Sed02g1059 | Sed-Chr2:47947712 | Sed12g1270 | Sed-Chr12:9189357 | 4.20E-29 | transposed | |
Sed02g1059 | Sed-Chr2:47947712 | Sed02g0333 | Sed-Chr2:39748139 | 4.20E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37591 | PF00010 | HLH | 1.10E-08 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1059 | - | - | - | 0.0 |