Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1061 ATGGCTATGGGGTTGGAGGCGGTGGCCGATCTTGGGCTTCACCTAATTTTCGCGAAATTAAGCCCTAAAGATTCCGCCATAGCCGCCTGTGTCAGCCGCAAATTCAGGTCCTCAGCGTCCGATGAATCTCTCTGGAAGAAATTCTGCAACCAGGACCTCGGCCTCGCCGACCCAATGGATGATTTCGGAAACCCAATTCCTTCCTTCAAGGAGACTTATCAAGTATGGCGCAGGGCTTTTGGTATGTACCCTTGGCCTCTAGTCAAGCGAGTTAAACGATGTTGGGATAGACTCAAAAACTGGTTGAGTGTAAATTTTCCAGAGGCTCTGGTAACGCTTGGGGGAGGTGCATCAGAAGCTAACATTCAAGAATTGGAGAATACTTTGAAGGTCAAGTTACCTCTTCCAACGAGAATCCTTTATCGTTTTCATGATGGTCAAGAGTTGAAAGGAAGATATGTTGATAGTATTCAAGGCTTTCCATTTGGTATAATAGGGGGATACACTTTCTATAACCGGACAGTTAATGTTTATATGCTACCTTTAAGACAGGTGATCTCTGAAACAAAATCAGTCATTCGAGACATTGATTTCTCAAGGAGATCCAAATTCATTGTTGTAGCTTCCTCTTCTACACTCATTGAGAAGGTTTTTCTCCTTAATTGTGATTCTGGTCAACTCTTTGTGGGTACTGAAAATCATCGGGAAGGCGGGGAAATGATGCCATGTGTACCTGCTGCATTGATAAATTCAGTGCATGAGTATGAAGCAGAACAACAACAAGATGCGATGTTATTATGGCTAGAAGAGCATGTTCGGCGTTTAGAAAATGGTATTATCAAGCTTCGTGAAACTGACAGCATTAGAAGCATATCTCTTTTTCCGGAAGAACCTCCCTTATGCTCTGTTGCAATAACCAATGGTGTCTGTGTTCGTGCTTCTGCTGTCTTTATCCCGGAGTTGACTAATCTTCTGGATAATGGTGGAAATTATCTATTTTCATATTCAATCCGCATGTCATTACAGGATGAAGGTTGCGTCATAAATGGGATTAAATTCGGCTCATGCCAATTGCATTTTAGACACTGGATAATCCAAGCTAATGGTTCTGTTGTTTCTAGAGTTAATGGAGAGGCTGTTATTGGAAAGTATCCCCTCTTGCATCCGGGAGAAGAAGAATTTTTCTACGAAAGTTGCTCGGCGCTTTATTCCTCTGTAGGCTCCATTGAGGGCTCTTTCACATTTGTTCCTGGAAGCTTGACACATCCAAAAGGCAGCCCGTTTGAAGCTGAAGTGGCTAAGTTCCATCTCCAGGTTCCAGACTACATCTTCTGA 1335 43.07 MAMGLEAVADLGLHLIFAKLSPKDSAIAACVSRKFRSSASDESLWKKFCNQDLGLADPMDDFGNPIPSFKETYQVWRRAFGMYPWPLVKRVKRCWDRLKNWLSVNFPEALVTLGGGASEANIQELENTLKVKLPLPTRILYRFHDGQELKGRYVDSIQGFPFGIIGGYTFYNRTVNVYMLPLRQVISETKSVIRDIDFSRRSKFIVVASSSTLIEKVFLLNCDSGQLFVGTENHREGGEMMPCVPAALINSVHEYEAEQQQDAMLLWLEEHVRRLENGIIKLRETDSIRSISLFPEEPPLCSVAITNGVCVRASAVFIPELTNLLDNGGNYLFSYSIRMSLQDEGCVINGIKFGSCQLHFRHWIIQANGSVVSRVNGEAVIGKYPLLHPGEEEFFYESCSALYSSVGSIEGSFTFVPGSLTHPKGSPFEAEVAKFHLQVPDYIF 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48034501 48040917 + Sed0013039.1 Sed02g1061 704729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1061 444 SUPERFAMILY F-box domain 13 76 IPR036047 GO:0005515(InterPro)
Sed02g1061 444 Pfam F-box-like 13 50 IPR001810 GO:0005515(InterPro)
Sed02g1061 444 Pfam ApaG domain 327 416 IPR007474 -
Sed02g1061 444 Gene3D ApaG domain 301 443 IPR036767 -
Sed02g1061 444 Gene3D - 9 101 - -
Sed02g1061 444 ProSiteProfiles ApaG domain profile. 303 444 IPR007474 -
Sed02g1061 444 SMART fbox_2 8 48 IPR001810 GO:0005515(InterPro)
Sed02g1061 444 SUPERFAMILY SMI1/KNR4-like 94 161 IPR037883 -
Sed02g1061 444 PANTHER F-BOX PROTEIN SKIP16 3 444 - -
Sed02g1061 444 SUPERFAMILY ApaG-like 305 444 IPR036767 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1061 K10290 - - csv:101212250 720.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1061 Sed-Chr2:48034501 Sed02g1062 Sed-Chr2:48034501 3.30E-225 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1272 . . . . . . . . . . . . . . Sed02g1061 . . Bhi01g01192 Tan10g1203 Cmetu06g2378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011929 1 2 1 1 1 0 1 0 0 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 2 1 2 30