Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1063 ATGGAGAAAGACAAACCCCAAATCCATTCTTCTGGATTTCTTCCCCCATCGAGTCGTTACTCGGCTCTTTCCCCATCTGCAACCAGTTTCAATGGAAAATCTGAGGTTACTTCGTGTTCAATGTCGCTTCCTCCAATGGCTCCGAGCCCGAATTCATCCGATTCCGGGCAGTTCGGTCGGGATTCGAATCGGTTCAGCCATGATATTAGCCGGATGCCTGATAACCCACCAAGGAATATTGGTCATAGACGTGCCCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTTGATAGTGACCTTGGTGTCATTGGTGGTGCTGATGGGCCTTCCTTTTCTGATGATACTGATGAAGATTTGTTGTCCATGTACCTTGACATGGATAAGTTCAATTCTTCTACTGCAACCTCTTCAGGTCAAGTTGGTGAATCTTCTTCTTCTTTGGAAGTGAAATCAAGTCCTGTTTCAGCAATTGGAGCTGTAGCTTTTAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCTAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGCTTGGCAAGTATCAAGCCTGAGATGCTTGTCTCCGGGTCTGAAGATGTTTCTGCTGCGGATTCTAAGAAGTCTATGTCAGCTTCTAAGCTTGCTGAGCTTGCTCTAATTGACCCCAAACGTGCAAAGAGAATATGGGCAAATCGACAATCGGCTGCGAGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAGCTTGAACGTAAAGTTCAGACTCTGCAAACTGAGGCTACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAATAGTGAACTAAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCACTCAAGGAAGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAACTTTGCTTCCTTTGGAGCTGGCCAACCCTTTTACCCAAACAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAGCAACTTCAAATCCACTCTCAGCAGCAGCAACAACAACAACAACAGCAACATTTTCAGTACCATCAGATGCATCAGCTTCAGCAGCAACCAACTGGAGACAACAAAATGAAAGGATCGAGTTCTTCTCCGAGCCCGAAAGACAACAACACATCGGATTCGTCGTCTCCATCTTGTTGA 1254 45.06 MEKDKPQIHSSGFLPPSSRYSALSPSATSFNGKSEVTSCSMSLPPMAPSPNSSDSGQFGRDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTDEDLLSMYLDMDKFNSSTATSSGQVGESSSSLEVKSSPVSAIGAVAFKDDAAVGLKERPRVRHQHSQSMDGLASIKPEMLVSGSEDVSAADSKKSMSASKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGAGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQHFQYHQMHQLQQQPTGDNKMKGSSSSPSPKDNNTSDSSSPSC 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48043232 48047305 + Sed0025172.1 Sed02g1063 704731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1063 417 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 225 288 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1063 417 MobiDBLite consensus disorder prediction 11 63 - -
Sed02g1063 417 Gene3D - 226 279 - -
Sed02g1063 417 SUPERFAMILY Leucine zipper domain 227 278 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1063 417 MobiDBLite consensus disorder prediction 1 82 - -
Sed02g1063 417 Pfam bZIP transcription factor 227 281 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1063 417 CDD bZIP_plant_RF2 228 277 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1063 417 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 66 391 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed02g1063 417 SMART brlzneu 223 287 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed02g1063 417 FunFam probable transcription factor PosF21 226 279 - -
Sed02g1063 417 Coils Coil 243 312 - -
Sed02g1063 417 MobiDBLite consensus disorder prediction 367 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1063 Sed-Chr2:48043232 Sed12g0694 Sed-Chr12:4156507 3.00E-167 dispersed
Sed12g0691 Sed-Chr12:4124522 Sed02g1063 Sed-Chr2:48043232 5.90E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37592 PF00170 bZIP_1 1.00E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1063 - - - 0.0