Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1063 | ATGGAGAAAGACAAACCCCAAATCCATTCTTCTGGATTTCTTCCCCCATCGAGTCGTTACTCGGCTCTTTCCCCATCTGCAACCAGTTTCAATGGAAAATCTGAGGTTACTTCGTGTTCAATGTCGCTTCCTCCAATGGCTCCGAGCCCGAATTCATCCGATTCCGGGCAGTTCGGTCGGGATTCGAATCGGTTCAGCCATGATATTAGCCGGATGCCTGATAACCCACCAAGGAATATTGGTCATAGACGTGCCCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTTGATAGTGACCTTGGTGTCATTGGTGGTGCTGATGGGCCTTCCTTTTCTGATGATACTGATGAAGATTTGTTGTCCATGTACCTTGACATGGATAAGTTCAATTCTTCTACTGCAACCTCTTCAGGTCAAGTTGGTGAATCTTCTTCTTCTTTGGAAGTGAAATCAAGTCCTGTTTCAGCAATTGGAGCTGTAGCTTTTAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCTAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGCTTGGCAAGTATCAAGCCTGAGATGCTTGTCTCCGGGTCTGAAGATGTTTCTGCTGCGGATTCTAAGAAGTCTATGTCAGCTTCTAAGCTTGCTGAGCTTGCTCTAATTGACCCCAAACGTGCAAAGAGAATATGGGCAAATCGACAATCGGCTGCGAGGTCAAAGGAAAGAAAGATGCGATACATTGCTGAGCTTGAACGTAAAGTTCAGACTCTGCAAACTGAGGCTACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAATAGTGAACTAAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCACTCAAGGAAGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAACTTTGCTTCCTTTGGAGCTGGCCAACCCTTTTACCCAAACAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAGCAACTTCAAATCCACTCTCAGCAGCAGCAACAACAACAACAACAGCAACATTTTCAGTACCATCAGATGCATCAGCTTCAGCAGCAACCAACTGGAGACAACAAAATGAAAGGATCGAGTTCTTCTCCGAGCCCGAAAGACAACAACACATCGGATTCGTCGTCTCCATCTTGTTGA | 1254 | 45.06 | MEKDKPQIHSSGFLPPSSRYSALSPSATSFNGKSEVTSCSMSLPPMAPSPNSSDSGQFGRDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTDEDLLSMYLDMDKFNSSTATSSGQVGESSSSLEVKSSPVSAIGAVAFKDDAAVGLKERPRVRHQHSQSMDGLASIKPEMLVSGSEDVSAADSKKSMSASKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGAGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQHFQYHQMHQLQQQPTGDNKMKGSSSSPSPKDNNTSDSSSPSC | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 48043232 | 48047305 | + | Sed0025172.1 | Sed02g1063 | 704731 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1063 | 417 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 225 | 288 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1063 | 417 | MobiDBLite | consensus disorder prediction | 11 | 63 | - | - | |
Sed02g1063 | 417 | Gene3D | - | 226 | 279 | - | - | |
Sed02g1063 | 417 | SUPERFAMILY | Leucine zipper domain | 227 | 278 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1063 | 417 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
Sed02g1063 | 417 | Pfam | bZIP transcription factor | 227 | 281 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1063 | 417 | CDD | bZIP_plant_RF2 | 228 | 277 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1063 | 417 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 66 | 391 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed02g1063 | 417 | SMART | brlzneu | 223 | 287 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed02g1063 | 417 | FunFam | probable transcription factor PosF21 | 226 | 279 | - | - | |
Sed02g1063 | 417 | Coils | Coil | 243 | 312 | - | - | |
Sed02g1063 | 417 | MobiDBLite | consensus disorder prediction | 367 | 417 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1063 | Sed-Chr2:48043232 | Sed12g0694 | Sed-Chr12:4156507 | 3.00E-167 | dispersed | |
Sed12g0691 | Sed-Chr12:4124522 | Sed02g1063 | Sed-Chr2:48043232 | 5.90E-176 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37592 | PF00170 | bZIP_1 | 1.00E-08 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1063 | - | - | - | 0.0 |