Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1069 ATGGAGCGGGAATTCCTCATGAACGATGGATGTGGGTTTTATGAGCTGAATTCGAGTGTGTTGTTCAACCCCAATTGGGAAAATTCCATGGATCAGAGCGATCTCTTTGAGTCCACTTTGAGTTCGATTGTGTCTTCTCCGGCGAACTCCCACGCCGGAACTGTCATCGCCGGCGGCGAAAGCGTGATGGTGCGGGAGTTGATCGGAAGGCTCGGGAGCATTTGCAATTCCGGTGAGGTTTCGCCTTTGAATGGAGCGAACAATAACAGTGCCAACACTTCTTGTTACAATACGCCTTTGAATTCGCCGCCAAAACTTAACTTGTCGCCGATCATGGAGTCTCATTTGAGAGGGAATTTGGTTCCTCAAAATCTGGCCCCATTTTCGGCTGATCTAGGGTTTGTTGAAAGGGCTGCGAGATTTTCTAGTTTTGGGAACATGAATCTTGCAGTGAATGGGCAATTGGGTTGTAATGAAACTCAAGAATTTGGTAACAGATCAATGGCTGGAACTGGAGTGGAATCTGGGAAGCTTTCTAGGGTTTCGAGTAACAAATCCTTTAATGTTGGTGGAATTGGACCCCAAATTGGGGTTCAGGAAGGCACCCAGAAGGGGAAATCAATGGCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAATGCCGGTGATTCGCGGGAGGGATCTTCGGTTTCGGAGCAGATTACAGGTGGGGAATTGGGTGTCAAGGGTAAAGGTGGAGTCAACACTAGGAAAAGGAAATCAGTTCACACTGTTGAAGCAAAGGAAGTGAAGGTTGTAGGAGAGGACTTAGAATCAAATGGAAAGAAAATCAAACCAGAGGAAGTTTCTAAGAAAGAGATGGATGTTGCAAAGGGAAAGGAAGAGACAAAAGATGACACAAAAACTTCAGAGGATGCAAATAAGAAGCAAAATAATGATAATTCAAAGCCTCTAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGGGGGCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTTCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTGATGCTTGATGAAATTATAAATTATGTTCAGTCTTTGCAGCACCAAGTTGAGTTTCTTTCAATGAAATTGGCAACTGTTAATCCAAGGATGGATTTTAACATGGAGACCCTTTTGCCCAAAGATATCTTCAAAGGTCCCGGTTCGTCACCACAAACGATTTACCCTATGGATTCATCTGTGGCCACATTCGCATATGAATATCAATCTATGCAAATGCCTCCTCTTCATAGTGGCATTTCTAATGGGACAGAGAAGCAATTCTCCATCGCATCGGCAAGTGACGTGTTGCAAAGAAATCTAACCGGGCAAATGCCGAACGGGTACAGCGAAGTTGGGAATGGAATCCAAATTTCAAAGTTCTGGGAGGATGAACTCCACACTGTAGTTCAGATGGGTTATGGACAAAACCAGCTGCATAATCCTAATGTAGGCTCTATGGCTGCAGATGAGATGAAAAGGGAATTGTAA 1596 44.49 MEREFLMNDGCGFYELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGTVIAGGESVMVRELIGRLGSICNSGEVSPLNGANNNSANTSCYNTPLNSPPKLNLSPIMESHLRGNLVPQNLAPFSADLGFVERAARFSSFGNMNLAVNGQLGCNETQEFGNRSMAGTGVESGKLSRVSSNKSFNVGGIGPQIGVQEGTQKGKSMANKKVLNRFSRSSTPENAGDSREGSSVSEQITGGELGVKGKGGVNTRKRKSVHTVEAKEVKVVGEDLESNGKKIKPEEVSKKEMDVAKGKEETKDDTKTSEDANKKQNNDNSKPLEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPRMDFNMETLLPKDIFKGPGSSPQTIYPMDSSVATFAYEYQSMQMPPLHSGISNGTEKQFSIASASDVLQRNLTGQMPNGYSEVGNGIQISKFWEDELHTVVQMGYGQNQLHNPNVGSMAADEMKREL 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48067959 48070884 + Sed0027782.3 Sed02g1069 704737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1069 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 408 IPR036638 GO:0046983(InterPro)
Sed02g1069 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983(InterPro)
Sed02g1069 531 Gene3D - 335 409 IPR036638 GO:0046983(InterPro)
Sed02g1069 531 MobiDBLite consensus disorder prediction 194 261 - -
Sed02g1069 531 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 126 462 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed02g1069 531 SMART finulus 344 394 IPR011598 GO:0046983(InterPro)
Sed02g1069 531 CDD bHLH_AtBPE_like 328 413 - -
Sed02g1069 531 MobiDBLite consensus disorder prediction 200 240 - -
Sed02g1069 531 MobiDBLite consensus disorder prediction 279 326 - -
Sed02g1069 531 FunFam Basic helix-loop-helix transcription factor 335 408 - -
Sed02g1069 531 Pfam Helix-loop-helix DNA-binding domain 342 389 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1067 Sed-Chr2:48067959 Sed02g1069 Sed-Chr2:48067959 1.80E-294 dispersed
Sed02g1069 Sed-Chr2:48067959 Sed02g1071 Sed-Chr2:48067959 1.10E-275 dispersed
Sed02g1068 Sed-Chr2:48067959 Sed02g1069 Sed-Chr2:48067959 7.80E-298 tandem
Sed02g1069 Sed-Chr2:48067959 Sed02g1070 Sed-Chr2:48067959 1.70E-292 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37595 PF00010 HLH 1.10E-05 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1069 - - - 0.0