Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1071 ATGGAGCGGGAATTCCTCATGAACGATGGATGTGGGTTTTATGAGCTGAATTCGAGTGTGTTGTTCAACCCCAATTGGGAAAATTCCATGGATCAGAGCGATCTCTTTGAGTCCACTTTGAGTTCGATTGTGTCTTCTCCGGCGAACTCCCACGCCGGAACTGTCATCGCCGGCGGCGAAAGCGTGATGGTGCGGGAGTTGATCGGAAGGCTCGGGAGCATTTGCAATTCCGGTGAGGTTTCGCCTTTGAATGGAGCGAACAATAACAGTGCCAACACTTCTTGTTACAATACGCCTTTGAATTCGCCGCCAAAACTTAACTTGTCGCCGATCATGGAGTCTCATTTGAGAGGGAATTTGGTTCCTCAAAATCTGGCCCCATTTTCGGCTGATCTAGGGTTTGTTGAAAGGGCTGCGAGATTTTCTAGTTTTGGGAACATGAATCTTGCAGTGAATGGGCAATTGGGTTGTAATGAAACTCAAGAATTTGGTAACAGATCAATGGCTGGAACTGGAGTGGAATCTGGGAAGCTTTCTAGGGTTTCGAGTAACAAATCCTTTAATGTTGGTGGAATTGGACCCCAAATTGGGGTTCAGGAAGGCACCCAGAAGGGGAAATCAATGGCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACCCCCGAAAATGCCGGTGATTCGCGGGAGGGATCTTCGGTTTCGGAGCAGATTACAGGTGGGGAATTGGGTGTCAAGGGTAAAGGTGGAGTCAACACTAGGAAAAGGAAATCAGTTCACACTGTTGAAGCAAAGGAAGTGAAGGTTGTAGGAGAGGACTTAGAATCAAATGGAAAGAAAATCAAACCAGAGGAAGTTTCTAAGAAAGAGATGGATGTTGCAAAGGGAAAGGAAGAGACAAAAGATGACACAAAAACTTCAGAGGATGCAAATAAGAAGCAAAATAATGATAATTCAAAGCCTCTAGAGCCTCCAAAGGATTATATCCATGTTAGAGCTAGAAGGGGGCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTTCGACGTGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTTCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTGATGCTTGATGAAATTATAAATTATGTTCAGTCTTTGCAGCACCAAGTTGAGTTTCTTTCAATGAAATTGGCAACTGTTAATCCAAGGATGGATTTTAACATGGAGACCCTTTTGCCCAAAGATATCTTCAAAGGTCCCGGTTCGTCACCACAAACGATTTACCCTATGGATTCATCTGTGGCCACATTCGCATATGAATATCAATCTATGCAAATGCCTCCTCTTCATAGTGGCATTTCTAATGGGACAGAGAAGCAATTCTCCATCGCATCGGCAAGTGACGTGTTGCAAAGAAATCTAACCGGGCAAATGCCGAACGGGTACAGCGAAGTTGGGAATGGAATCCAAGTAAATTGCTAA 1488 44.56 MEREFLMNDGCGFYELNSSVLFNPNWENSMDQSDLFESTLSSIVSSPANSHAGTVIAGGESVMVRELIGRLGSICNSGEVSPLNGANNNSANTSCYNTPLNSPPKLNLSPIMESHLRGNLVPQNLAPFSADLGFVERAARFSSFGNMNLAVNGQLGCNETQEFGNRSMAGTGVESGKLSRVSSNKSFNVGGIGPQIGVQEGTQKGKSMANKKVLNRFSRSSTPENAGDSREGSSVSEQITGGELGVKGKGGVNTRKRKSVHTVEAKEVKVVGEDLESNGKKIKPEEVSKKEMDVAKGKEETKDDTKTSEDANKKQNNDNSKPLEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPRMDFNMETLLPKDIFKGPGSSPQTIYPMDSSVATFAYEYQSMQMPPLHSGISNGTEKQFSIASASDVLQRNLTGQMPNGYSEVGNGIQVNC 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48067959 48070884 + Sed0027782.5 Sed02g1071 704739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1071 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983(InterPro)
Sed02g1071 495 MobiDBLite consensus disorder prediction 194 261 - -
Sed02g1071 495 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 126 445 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed02g1071 495 FunFam Basic helix-loop-helix transcription factor 335 408 - -
Sed02g1071 495 Pfam Helix-loop-helix DNA-binding domain 342 389 IPR011598 GO:0046983(InterPro)
Sed02g1071 495 SMART finulus 344 394 IPR011598 GO:0046983(InterPro)
Sed02g1071 495 CDD bHLH_AtBPE_like 328 413 - -
Sed02g1071 495 MobiDBLite consensus disorder prediction 279 326 - -
Sed02g1071 495 MobiDBLite consensus disorder prediction 200 240 - -
Sed02g1071 495 Gene3D - 335 409 IPR036638 GO:0046983(InterPro)
Sed02g1071 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 336 408 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1069 Sed-Chr2:48067959 Sed02g1071 Sed-Chr2:48067959 1.10E-275 dispersed
Sed02g1071 Sed-Chr2:48067959 Sed12g0702 Sed-Chr12:4204407 1.90E-205 dispersed
Sed02g1070 Sed-Chr2:48067959 Sed02g1071 Sed-Chr2:48067959 1.10E-275 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37597 PF00010 HLH 1.00E-05 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1071 - - - 0.0