Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1073 ATGAAGCACTTTATGCAGCCAAGAAACCCCATCTTGCGAGATCCCCATGTCGCCGCGGACTCGCCGTGCCCTATCGCCGGGCTCAAGGGCAGGCCCCCGAGGAAGCCCAAGTCCGCCGCCAAGGAGAACGCCCCGCCCTCAGATCCCAACTCCATGGTTCCCGATCCCAAGCCCTCGCCGGCCAAGTTGAAGAGCCCGCTTCCTCCTCGCCCTCCGCCGTGCAATCCGCTCAAACGCAAGCTCGGTATGGAGGCCGTTCCTGAGAATTCTGTCCCTGGGTTGTCTGAATCTGGTGTGAAGGTGGTAGTGCGCATGAGGCCGCCAAGCAAGGACAGAGATGAAGGGGATAACATTGTACAGAAAGTTACTGATGATTCTTTGTCAATAAATGGACAAATGTTTACTTTTGATGCTGTTGCTGACACAGAGGCAACACAGCTTGATATCTTCCAGCTTGTAGGAGAACCCCTTGTTGAAAATTGCATGGCAGGTTTCAACAGTTCTGTATTTGCATATGGGCAGACTGGAAGTGGAAAGACATACACCATGTGGGGTCCAGCCAACGCCTTACCGGATGACAATTTGTTATGCGAACAAAAAGGCTTAACTCCTCGTGTTTTTGAACGACTCTTTGCTCGTATAAATGAGGAACAAGTGAAGCATGCTGACAAGTTACTCAAGTATCAGTGTTACTGTTCTTTTCTCGAGATTTACAATGAGCAAATCACCGATTTATTGGATCCAAATCAGAGAAACCTTCAGATTAGAGAAGATGTAAAATCTGGTGTGTATGTCGAAAACCTAACGGAGGAGTGTGTATCCACAATGGCAGACGTTACTCAGCTTTTAATGAAGGGTTTATCAAATAGGAGGACTGGTGCAACGAGTATAAATTCTGAGAGTTCGCGATCACATACTGTTTTTACCTGCGTTGTTGAATCTCGATCCAAGAGGATAGCTGATGGCTTAAGTAGCTTTAAAACGAGCAGAATAAATCTTGTTGACTTAGCTGGTTCCGAGAGGCAGAAGCTAACAGGTGCAGCTGGGGAGCGTTTGAAGGAAGCAGGAAATATCAACAGATCACTCTCGCAACTTGGGAATCTGATCAATATTCTTGCCGAGATTTCTCAAACTGGAAAACAAAGGCACATCCCGTATAGAGACTCCAGGCTCACTTTTTTATTGCAAGAATCTCTTGGAGGAAATGCAAAATTAGCGATGGTTTGTGCCATTTCTCCATCACAAAGCAACAAGAGTGAAAGTTTTAGTACCTTGAGGTTTGCCCAGCGTGCAAAAGCTATAAAAAACAAAGCTATTGTTAATGAAGTTATGCAAGATGATGTGAATCACTTGCGTGAAGTGATACGACAACTCAGGGACGAACTACACCGTCTAAAGTCTAATGGAAATAGTTCAAATGATGCAAATGGAGTGTCCTCTGCAGCATGGATTCGAAGAAGCTTACATCTACTAAAGTCTAGTATGAGCCGTCATATCACATTACCTCATGTGGATGATGATGGTGATCAAGAAATGGAAATTGACGAGGAAGCTGTTGAAAAGCTCTGTGGTCAACTGAACAAACAAAATACTGGTTCAAAGGCTAGTGAAGCGAAGGAAACCGAAACTATTAAATCAAGTTCATCAATTGCCTTAGAAGGAAACGAGTTATCTGGAAGTGAATGTCAAAAGGAAAATTCTGATGATATAGATGTAAATATGGAAGAGGAAACATCTGTACATGATGAGGTTATGACTGTTGGTTCGACGGAAGAACCAGTTTTCGATACTCCAGTATGTTCCCATGCCAACGACCACTATAACCTTGAAGCACAAAATCAAATAGCAATAAACTTGCTTGACCAAATCTTCTCAGGTGAACCTTCTGAGAATAATATTATGAGCTCTTCAATGGAAAGAGTAAAAAGTGGAGAAATAAAAACTCCAGGAGATGGCCCTTTGTGTACATCCTCTGAACCTCTCAGTGGATTTCAGGCTATTAAGTCAGATTTGGAAACACTCAGCAGTCTCTCAAATGGAATTCTTAGTTGTGTTTCTCCTCCAGGTCTCAGCATAGTTCCTTGTAATGTGTCACCAGTTCTTAAATCCCCTACTCCCAGTGTTTCACCTAGAATCAGTGATAGCAGGAAAAGCTTAAAGACTTCAACAATTTTGTCTGCTTCACAGAAAGATCTTCAGGCTGAGACTAAGCCTGGTTTAGATCTTCTGCAAAAACCACTTGAAAAGTCCTTGAGAATGAGTTCTGCTGATGCATTATCAATGTCTACCCAGAGTAAGAACAATGCTGTAACAACAGAGCAGTTGGCTGCAAGCATCCGAAATGGGCTTGAAATTATTGATAGTTGTCGTCAGAGTTCAGCATTCAGACGGTCTTCATTTAGATTTTCATATAAACCTGCAGAAAAGGTTAACATGCCAGTAAACAAAACCGATGTAGGTGTGCAAACATCTTGCAGCGATGAGGCTTCTGGTGAAAACCTTTTTATGTGCAGTAGTTGTAGAATTAGAAAGCAGCTAGAGGTTAGAGAGGAGCATAGCAGTTCAGATATGCAATTAGTACCTGTGGATGTTCCAGACTCTGCTGAGAAATCCAGGATACAAGTTCCTAAAGCAGTTGAGAAAGTTCTTGCTGGGGCTATCAGAAGAGAAATGGCACTTGAGGAGTACTGCAACAAGCAAGCATTCGATATTAGTCAACTCAACCGTTTGGTTCAACAGTACAAACATGAGAGAGAATGCAATGCTGTACTTGGGCAAGCCAGAGAAGACAAAATTCTTCGACTTGAGAGCCTCGTGGATGGTGTCTTACCAACTGAGGACTTCATGGAGGAGGAACTAGTGTCTCTCACAAATGAGCATAAGGTTTTAAAGGAAAAATATGAGAATCACCCTGAAGTCCTACAGAAACGAATGGAGTTGAAAAAAGTTAAAGATGAATTGCAAAGTTATAGGAATTTCCATGACTTGGGTGAGAGAGAAGTGCTAATGGAAGAGATTCAAGATTTAAGAAGCCAGCTGCAATATTACATTGACTCACCTTCCACATCCTCGCGAAAGCAAAACTCTCTTTTGCAATTGACTTATTCTGAACCTAGTAGCCCTCCACCTCTTGGTGCAATTCCGGAGTTAACCGAAGAGACTGTCGAGAAGAAACTTGAAGAGGAGAGAGTTCGTTGGACCGAGGCAGAGAGCAAGTGGATCTCTCTTTCAGAAGAATTGAGAAGCGAACTTGAAGCGAGCAGGTTGCTAGCAGAAAAAAGAAAACGAGAGTTTGAAGCTGAGAAGGAATGTGCTCAAGAGTTGGAGGAAGCTATGCGAATGGCCATGGCAGTCCATGCACGTTTGCTAGAACAGTATGCAGACTTGGAAGAAAAGCATATGCATCTGCTTCTAAGACACAGAAAGATGCAGGATGGAATTGGGGATGTAAAAAAGGCAGCTGCTAGAGCAGGAGTTAAGGGTGCAGAGTCTAAATTCATTAATGCCCTTGCTGCTGAAATTTCTGCGCTAAAAGTTGAAAGAGAACGAGAAAGACGCTATCTAAGAGATGAGAACAAGGGACTTCAAGCTCAATTGAGAGATACTGCTGAGGCTGTGCAGGCTGCAGGTGAATTGCTTGTGCGGCTCAAAGAAGCAGAAGAGGGAGTTGCTGCTGCTCAGGTCAGTTACAAAATGATATAG 3702 43.35 MKHFMQPRNPILRDPHVAADSPCPIAGLKGRPPRKPKSAAKENAPPSDPNSMVPDPKPSPAKLKSPLPPRPPPCNPLKRKLGMEAVPENSVPGLSESGVKVVVRMRPPSKDRDEGDNIVQKVTDDSLSINGQMFTFDAVADTEATQLDIFQLVGEPLVENCMAGFNSSVFAYGQTGSGKTYTMWGPANALPDDNLLCEQKGLTPRVFERLFARINEEQVKHADKLLKYQCYCSFLEIYNEQITDLLDPNQRNLQIREDVKSGVYVENLTEECVSTMADVTQLLMKGLSNRRTGATSINSESSRSHTVFTCVVESRSKRIADGLSSFKTSRINLVDLAGSERQKLTGAAGERLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSNKSESFSTLRFAQRAKAIKNKAIVNEVMQDDVNHLREVIRQLRDELHRLKSNGNSSNDANGVSSAAWIRRSLHLLKSSMSRHITLPHVDDDGDQEMEIDEEAVEKLCGQLNKQNTGSKASEAKETETIKSSSSIALEGNELSGSECQKENSDDIDVNMEEETSVHDEVMTVGSTEEPVFDTPVCSHANDHYNLEAQNQIAINLLDQIFSGEPSENNIMSSSMERVKSGEIKTPGDGPLCTSSEPLSGFQAIKSDLETLSSLSNGILSCVSPPGLSIVPCNVSPVLKSPTPSVSPRISDSRKSLKTSTILSASQKDLQAETKPGLDLLQKPLEKSLRMSSADALSMSTQSKNNAVTTEQLAASIRNGLEIIDSCRQSSAFRRSSFRFSYKPAEKVNMPVNKTDVGVQTSCSDEASGENLFMCSSCRIRKQLEVREEHSSSDMQLVPVDVPDSAEKSRIQVPKAVEKVLAGAIRREMALEEYCNKQAFDISQLNRLVQQYKHERECNAVLGQAREDKILRLESLVDGVLPTEDFMEEELVSLTNEHKVLKEKYENHPEVLQKRMELKKVKDELQSYRNFHDLGEREVLMEEIQDLRSQLQYYIDSPSTSSRKQNSLLQLTYSEPSSPPPLGAIPELTEETVEKKLEEERVRWTEAESKWISLSEELRSELEASRLLAEKRKREFEAEKECAQELEEAMRMAMAVHARLLEQYADLEEKHMHLLLRHRKMQDGIGDVKKAAARAGVKGAESKFINALAAEISALKVERERERRYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEGVAAAQVSYKMI 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48077683 48085403 - Sed0005082.2 Sed02g1073 704741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1073 1233 FunFam Kinesin-like protein KIN-12F 94 473 - -
Sed02g1073 1233 Gene3D Kinesin motor domain 94 468 IPR036961 -
Sed02g1073 1233 PANTHER KINESIN-LIKE PROTEIN KIN-12D 96 475 IPR044986 -
Sed02g1073 1233 MobiDBLite consensus disorder prediction 1 93 - -
Sed02g1073 1233 Coils Coil 946 966 - -
Sed02g1073 1233 ProSiteProfiles Kinesin motor domain profile. 98 434 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed02g1073 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 467 IPR027417 -
Sed02g1073 1233 PRINTS Kinesin heavy chain signature 295 312 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed02g1073 1233 PRINTS Kinesin heavy chain signature 384 405 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed02g1073 1233 PRINTS Kinesin heavy chain signature 164 185 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed02g1073 1233 PRINTS Kinesin heavy chain signature 330 348 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed02g1073 1233 Pfam Kinesin motor domain 120 434 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed02g1073 1233 MobiDBLite consensus disorder prediction 526 561 - -
Sed02g1073 1233 Coils Coil 441 468 - -
Sed02g1073 1233 SMART kinesin_4 96 442 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Sed02g1073 1233 MobiDBLite consensus disorder prediction 526 568 - -
Sed02g1073 1233 Coils Coil 1081 1132 - -
Sed02g1073 1233 ProSitePatterns Kinesin motor domain signature. 329 340 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Sed02g1073 1233 MobiDBLite consensus disorder prediction 49 76 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1073 K10400 - - csv:101216258 1945.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1073 Sed-Chr2:48077683 Sed12g0704 Sed-Chr12:4212341 0.00E+00 dispersed
Sed02g1072 Sed-Chr2:48076258 Sed02g1073 Sed-Chr2:48077683 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g296 . . . Bda08g00291 . . . . Cmo08g01203 Cmo17g00316 . . . . . . . . . . . . . . Cla06g00478 Cam06g0512 Cec06g0513 Cco06g0516 Clacu06g0496 Cmu06g0498 Cre06g1269 Cone14ag0761 Cone15ag0770 . . . . Chy11g01510 . . . . . Bpe05g00836 . . . Sed02g1073 . . Cma08g01228 Cma17g00327 Car08g01104 Car17g00301 Cpe12g00278 Cpe17g00027 Bhi12g02054 Tan06g2680 Cmetu07g0697 . . . . . . . . . . . Lsi09g01431 . . Cme11g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 38