Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1074 ATGGACAACAATTTCGAGATCCCAATTGCAAGCAATGTGGACGAGGAAATGGGCGTTCCCGAGGACGAAGGGGAGAGCCCGGCCATGAAGGTTGGCGAAGAGAAGGAGATTGGGAACAGGGGGCTGAAGAAGAAACTTGTTAAGGAAGGCGAAGAATGGGAAACTCCCGACACTGGAGATGAAGTTGAAGTGCATTATACTGGAACCCTTCTGGATGGGACTAAATTTGATTCTAGCCGTGACCGAGGAATGCCCTTTAAGTTTAAGCTCGGTGAAGGGCAAGTGATTAAAGGATGGGATGACGGTATCATAACTATGAGAAAGGGTGAAAATGCAGTTTTCACGATACCCCCTGAATTGGCCTATGGAGAGTCAGGCTCTCCTCCAAAAATTCCACCTAATGCTACCCTTAAATTTGATGTTGAGCTACTATCATGGCACAGCGTCAAAGATATCTGTGAAGATGGTGGAATCTTAAAAAAGATCCTTGTTAAAGGAGACGGTTGGGAGAAACCGAAGGATTTAGATGAAGTATTGGTTAATTATGAGGCTCGTCTTGAAGATGGTACACTGATATCGAAGTCTGATGGGGTTGAATTCACCATTGAAAAGGGGTACTTCTGTCCTGCCTTGGCAACATCTGTGAAGACTATGAAGAAGGGAGAGAAGGTGCTGTTGACTGTGAGACCAAAGTACGCATTTGGGGAGTCTGGCAGGCCTGCAGCTGGAGAAGAAGGGGCTGTACCTCCTAATGCCACACTTCAGATAACCCTTGAATTGGTTTCTTGGAAAACCATTACAGAAATTACCAAGGATAAGAAGGTTTTGAAAAAGACCCTGAAGGAGGGTGAAGGATATGAACAGCCAAATGAAGGGGCAGTGGTTCAAGTGAAACTTACTGGTAAACTGGCCGATGGGACTGTTTTTACCAAGAAGGGTGATGATGAGAAGCCTTTTGAGTTCAGAACCGATGAAGAACAAGTCATTGAAGGAATTGATTTGGCTGTGAGAAAGATGAAGAAAGGAGAAGTAGCCTTGGTGACCATCCATCCACAATATGCTTTTGGATCTTCAGATTCATCTCAAGATCTAGCTGCAGTTCCTACAAACTCAACTGTATATTACGAAGTCGAGCTGGTTTCATTCGTCAAAGAAAAAGAATCTTGGGATCTGAACACTCCAGAGAAGATAGAAGCAGCAGGGAAAAAGAAGGAAGAAGGAAATGCTTTGTTCAAAGTTGGAAAATATGACCGAGCTTCAAGAAGATATGAACAGGCTGTACGCTACATTGAATATGATACTACTTTCAACGACGAAGAGAAACAACAGAGCAAGGCACTAAAGGTTTCGTGCAACCTCAACAATGCTGCGTGCAAACTGAAAGTTAAAGACTACAAGCAAGCGGAAAAGCTATGTACAAAGGTCTTAGAAATCGACAGTAGAAATGTGAAAGCTCTCTATAGAAGGACTCAAGCATATATTCAACTTGTTGATCTTGATCTTGCTGAGATGGATATCAAAAAAGCCCTTGAGATAGACCCCGATAACAGGGAAGTTAAGATCGAATACAGACAGCTGAAGGAGAAAGTGAGAGAATACAACAAGAAAGATGCCAAGTTTTATGGCAACATTTTTGCAAAAATGAACAAGCTGGAACAGGGTTCAGGTGGGAAGCAGGAGGCAGTGCCAATGACCATACATAGCAAAGCTTAA 1713 43.2 MDNNFEIPIASNVDEEMGVPEDEGESPAMKVGEEKEIGNRGLKKKLVKEGEEWETPDTGDEVEVHYTGTLLDGTKFDSSRDRGMPFKFKLGEGQVIKGWDDGIITMRKGENAVFTIPPELAYGESGSPPKIPPNATLKFDVELLSWHSVKDICEDGGILKKILVKGDGWEKPKDLDEVLVNYEARLEDGTLISKSDGVEFTIEKGYFCPALATSVKTMKKGEKVLLTVRPKYAFGESGRPAAGEEGAVPPNATLQITLELVSWKTITEITKDKKVLKKTLKEGEGYEQPNEGAVVQVKLTGKLADGTVFTKKGDDEKPFEFRTDEEQVIEGIDLAVRKMKKGEVALVTIHPQYAFGSSDSSQDLAAVPTNSTVYYEVELVSFVKEKESWDLNTPEKIEAAGKKKEEGNALFKVGKYDRASRRYEQAVRYIEYDTTFNDEEKQQSKALKVSCNLNNAACKLKVKDYKQAEKLCTKVLEIDSRNVKALYRRTQAYIQLVDLDLAEMDIKKALEIDPDNREVKIEYRQLKEKVREYNKKDAKFYGNIFAKMNKLEQGSGGKQEAVPMTIHSKA 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48087014 48092276 - Sed0005666.1 Sed02g1074 704742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1074 570 MobiDBLite consensus disorder prediction 1 58 - -
Sed02g1074 570 Gene3D - 29 150 IPR046357 GO:0003755(InterPro)
Sed02g1074 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 144 IPR001179 GO:0003755(InterPro)
Sed02g1074 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755(InterPro)
Sed02g1074 570 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 261 IPR001179 GO:0003755(InterPro)
Sed02g1074 570 PANTHER PEPTIDYLPROLYL ISOMERASE 33 145 IPR050754 -
Sed02g1074 570 SUPERFAMILY FKBP-like 269 400 - -
Sed02g1074 570 Gene3D Tetratricopeptide repeat domain 389 543 IPR011990 GO:0005515(InterPro)
Sed02g1074 570 SUPERFAMILY FKBP-like 35 155 - -
Sed02g1074 570 SUPERFAMILY FKBP-like 153 268 - -
Sed02g1074 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755(InterPro)
Sed02g1074 570 SUPERFAMILY TPR-like 395 548 IPR011990 GO:0005515(InterPro)
Sed02g1074 570 Coils Coil 516 536 - -
Sed02g1074 570 Gene3D - 151 263 IPR046357 GO:0003755(InterPro)
Sed02g1074 570 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515(InterPro)
Sed02g1074 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755(InterPro)
Sed02g1074 570 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755(InterPro)
Sed02g1074 570 SMART tpr_5 483 516 IPR019734 GO:0005515(InterPro)
Sed02g1074 570 SMART tpr_5 449 482 IPR019734 GO:0005515(InterPro)
Sed02g1074 570 SMART tpr_5 400 433 IPR019734 GO:0005515(InterPro)
Sed02g1074 570 MobiDBLite consensus disorder prediction 26 53 - -
Sed02g1074 570 FunFam Peptidylprolyl isomerase 32 150 - -
Sed02g1074 570 Pfam Tetratricopeptide repeat 484 516 IPR019734 GO:0005515(InterPro)
Sed02g1074 570 FunFam Peptidylprolyl isomerase 151 264 - -
Sed02g1074 570 FunFam Peptidylprolyl isomerase 388 543 - -
Sed02g1074 570 FunFam Peptidylprolyl isomerase 265 385 - -
Sed02g1074 570 Gene3D - 264 388 IPR046357 GO:0003755(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3379 Sed-Chr1:62878957 Sed02g1074 Sed-Chr2:48087014 1.00E-13 dispersed
Sed02g1074 Sed-Chr2:48087014 Sed09g0999 Sed-Chr9:32865455 2.70E-240 dispersed
Sed02g1074 Sed-Chr2:48087014 Sed02g1075 Sed-Chr2:48087014 2.10E-272 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1074 K09571 - csv:101210041 989.949