Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1075 | ATGGACAACAATTTCGAGATCCCAATTGCAAGCAATGTGGACGAGGAAATGGGCGTTCCCGAGGACGAAGGGGAGAGCCCGGCCATGAAGGTTGGCGAAGAGAAGGAGATTGGGAACAGGGGGCTGAAGAAGAAACTTGTTAAGGAAGGCGAAGAATGGGAAACTCCCGACACTGGAGATGAAGTTGAAGTGCATTATACTGGAACCCTTCTGGATGGGACTAAATTTGATTCTAGCCGTGACCGAGGAATGCCCTTTAAGTTTAAGCTCGGTGAAGGGCAAGTGATTAAAGGATGGGATGACGGTATCATAACTATGAGAAAGGGTGAAAATGCAGTTTTCACGATACCCCCTGAATTGGCCTATGGAGAGTCAGGCTCTCCTCCAAAAATTCCACCTAATGCTACCCTTAAATTTGATGTTGAGCTACTATCATGGCACAGCGTCAAAGATATCTGTGAAGATGGTGGAATCTTAAAAAAGATCCTTGTTAAAGGAGACGGTTGGGAGAAACCGAAGGATTTAGATGAAGTATTGGTTAATTATGAGGCTCGTCTTGAAGATGGTACACTGATATCGAAGTCTGATGGGGTTGAATTCACCATTGAAAAGGGGTACTTCTGTCCTGCCTTGGCAACATCTGTGAAGACTATGAAGAAGGGAGAGAAGGTGCTGTTGACTGTGAGACCAAAGTACGCATTTGGGGAGTCTGGCAGGCCTGCAGCTGGAGAAGAAGGGGCTGTACCTCCTAATGCCACACTTCAGATAACCCTTGAATTGGTTTCTTGGAAAACCATTACAGAAATTACCAAGGATAAGAAGGTTTTGAAAAAGACCCTGAAGGAGGGTGAAGGATATGAACAGCCAAATGAAGGGGCAGTGGTTCAAGTGAAACTTACTGGTAAACTGGCCGATGGGACTGTTTTTACCAAGAAGGGTGATGATGAGAAGCCTTTTGAGTTCAGAACCGATGAAGAACAAGTCATTGAAGGAATTGATTTGGCTGTGAGAAAGATGAAGAAAGGAGAAGTAGCCTTGGTGACCATCCATCCACAATATGCTTTTGGATCTTCAGATTCATCTCAAGATCTAGCTGCAGTTCCTACAAACTCAACTGTATATTACGAAGTCGAGCTGGTTTCATTCGTCAAAGAAAAAGAATCTTGGGATCTGAACACTCCAGAGAAGATAGAAGCAGCAGGGAAAAAGAAGGAAGAAGGAAATGCTTTGTTCAAAGTTGGAAAATATGACCGAGCTTCAAGAAGATATGAACAGGCTGTACGCTACATTGAATATGATACTACTTTCAACGACGAAGAGAAACAACAGAGCAAGGCACTAAAGGTTTCGTGCAACCTCAACAATGCTGCGTGCAAACTGAAAGTTAAAGACTACAAGCAAGCGGAAAAGCTATGTACAAAGGTCAACCCTGTTCTACTTCAATCTCAAAGATCTGACATGATAGAATCCATTTTCTTTCACGGCAAACAGACAGGTCTAATTTCTGGGTCAACAGGTCTTAGAAATCGACAGTAG | 1536 | 43.55 | MDNNFEIPIASNVDEEMGVPEDEGESPAMKVGEEKEIGNRGLKKKLVKEGEEWETPDTGDEVEVHYTGTLLDGTKFDSSRDRGMPFKFKLGEGQVIKGWDDGIITMRKGENAVFTIPPELAYGESGSPPKIPPNATLKFDVELLSWHSVKDICEDGGILKKILVKGDGWEKPKDLDEVLVNYEARLEDGTLISKSDGVEFTIEKGYFCPALATSVKTMKKGEKVLLTVRPKYAFGESGRPAAGEEGAVPPNATLQITLELVSWKTITEITKDKKVLKKTLKEGEGYEQPNEGAVVQVKLTGKLADGTVFTKKGDDEKPFEFRTDEEQVIEGIDLAVRKMKKGEVALVTIHPQYAFGSSDSSQDLAAVPTNSTVYYEVELVSFVKEKESWDLNTPEKIEAAGKKKEEGNALFKVGKYDRASRRYEQAVRYIEYDTTFNDEEKQQSKALKVSCNLNNAACKLKVKDYKQAEKLCTKVNPVLLQSQRSDMIESIFFHGKQTGLISGSTGLRNRQ | 511 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 48087014 | 48092276 | - | Sed0005666.2 | Sed02g1075 | 704743 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1075 | 511 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Sed02g1075 | 511 | Gene3D | - | 29 | 150 | IPR046357 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | SUPERFAMILY | FKBP-like | 35 | 155 | - | - | |
Sed02g1075 | 511 | SUPERFAMILY | FKBP-like | 153 | 268 | - | - | |
Sed02g1075 | 511 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 54 | 144 | IPR001179 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 286 | 380 | IPR001179 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 169 | 261 | IPR001179 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 59 | 147 | IPR001179 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | Gene3D | - | 151 | 263 | IPR046357 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | FunFam | Peptidylprolyl isomerase | 32 | 150 | - | - | |
Sed02g1075 | 511 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 175 | 264 | IPR001179 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | SUPERFAMILY | TPR-like | 395 | 475 | IPR011990 | GO:0005515(InterPro) | |
Sed02g1075 | 511 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 292 | 383 | IPR001179 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | FunFam | Peptidylprolyl isomerase | 151 | 264 | - | - | |
Sed02g1075 | 511 | MobiDBLite | consensus disorder prediction | 26 | 53 | - | - | |
Sed02g1075 | 511 | Gene3D | - | 264 | 388 | IPR046357 | GO:0003755(InterPro) | |
Sed02g1075 | 511 | Gene3D | Tetratricopeptide repeat domain | 389 | 484 | IPR011990 | GO:0005515(InterPro) | |
Sed02g1075 | 511 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 33 | 145 | IPR050754 | - | |
Sed02g1075 | 511 | FunFam | Peptidylprolyl isomerase | 265 | 385 | - | - | |
Sed02g1075 | 511 | SUPERFAMILY | FKBP-like | 269 | 400 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1075 | Sed-Chr2:48087014 | Sed09g0999 | Sed-Chr9:32865455 | 5.40E-203 | dispersed | |
Sed02g1074 | Sed-Chr2:48087014 | Sed02g1075 | Sed-Chr2:48087014 | 2.10E-272 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1075 | K09571 | - | csv:101210041 | 830.476 |