Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1076 ATGTCGGAAATGGCGAACGCAGATCCCGAAGGAATCGACGGAGTCCGTATGAGCTGGAACGTCTGGCCTCGCACCAAAGTCGAATCCAGCAAGTGCGTCATCCCACTCGCCGCCTCCATCGCTCCGATCCGCCCTCACCCCGAGATCCCCACGCTCCCCTACGCGCCGCTCCGATGTAAGTCCTGCTCCGCCGTCCTCAACCCCTTTTCCCGTGTTGACTTCACCGCCAAGATTTGGATCTGCCCTTTTTGTTACCAGCGATGCCATTTCCCCCCTCATTACGCCATGATCTCTGAAACCCATCTCCCCGGCGAGCTTTACCCGCAGTATACGACCGTTCAATATGCAATTCCCCAATCTGTTAACCCTAATCCTGGTTTGGATTCCGGGAATCCGAATCCTCCCCCTGTGTTTCTGTTCTTGCTTGATACTTGTATGATCGAGGAAGAATTGGGGTTTGTGAAATCTGCGCTTAAACGGGCGATTGGGTTGTTGCCTGACAATGCGCTTGTTGGGTTTGTTTCGTTTGGGACTCAGGTTCAGGTTTATGAATTGGGGTTCTCTGATATGTCTAAGGTGTTTGTGTTTCGCGGTTCGAAGGAGATTTCGAAGGACCAGGTTCTGGAGCAATTGGGTCTTGGAATGGGAGGGCGGAGAGTTGGTGGAGCCTATCAAAAGGGAGTCCAGAATGGATTCCCTGGTTCGGGTGTTACTCGGTTTTTGTTGCCTGCTGCTGAATGCGAATATACCCTCAATTCGTTGTTGGATGAACTTCAAACGGATCAATGGCCTGTTTCTCCTGGTACTCGGGCATCTCGGTGCACCGGAGTGGCGTTGAGTGTTGCAGCTAGTTTGCTTGGAGCTTGTTTGCCTGGAACAGGTGCTCGAATTATTGCTTTGGTTGGTGGGCCATGCACAGAAGGGCCTGGCACGATTGTTTCCAAAGATCTATCAGAACCAGTACGTTCACATAAAGATCTTGACAAGGATGCAGCTCCTTACTTTAAAAAAGCAATCAAATTTTATGAAAGTCTTGCAAAGCAGCTGGTCGGCCAAGGCCATGTCTTGGATCTTTTTGCATCAGCACTTGATCAGGTTGGTGTTGCAGAAATGAAAGTTGCAGTAGAAAAAACCGGTGGTCTTGTTGTTCTAGCTGAAAGCTTTGGACATTCTGTATTTAAGGATTCCTTCAAGCGTGTGTTCGAAGAAGGGGAACACTCTCTTGGTCTTTGCTTTAATGGTACACTTGAGATCAATTGTTCAAAGGATATCAAAATTCAGGGGATAATTGGACCTTGCACATCTTTGGAGAAGAAAGGTCCTGCTGTTGCTGATACTGTTATTGGAGAGGGAAATACAACAATGTGGAAAATGTGTGGCCTTGACAAAAGCACTTGTTTGACAGTGTTTTTTGATCTTTCATCCAGTGATAGAACAAGTAATCCGGGAACTGCATATCCACAGTTGTATTTGCAGTTTCTTACTAGTTATCAAGATCCTGAAGGCCAGTCAATGCTTCGGGTTACAACTGTCACGAGAAGATGGATAGACACTCCAATCAGCTCGGAGGAATTGGTGCAAGGGTTTGATCAAGAGGCTGCTGCAGTTGTAGTGGCGAGATTAACTTCCTTGAAAATGGAGATGGAGGAGGGATTTGATGCTATTCGATGGTTGGATCGATCCTTGATTCGCCTCTGTTCAAAGTTTGGTGAATATCGGAAGGATGACCCATCTTCCTTTACTCTAAACCCTTGCTTTTCTTTGTTTCCTCAGTTCATGTTTAATTTGCGCCGTTCACAATTTGTACAGGTTTTTAACAACAGTCCAGATGAAACTGCATGTTTTAGGATGTTGTTAAACAGGGAGAACGTTACTAATGCTGCAGTGATGATTCAGCCATCACTAATATCGTACTCATTCAATTCACTGCCTGCACCAGCATTATTAGATGTTGCTTCCATTGCAGCTGATCGCATTCTCCTGCTAGATTCATATTTCAGTGTTGTCGTATTTCATGGAATGACAATAGCTCAGTGGCGTAATATGGGATACCAAACTCAGCCAGAACACCAGGCATTTGCACAGTTATTGCAAGCTCCTCAAGATGATGCCCAAATTATCATTAACGAACGTTTTCCAGTTCCTCGCTTGGTTGTCTGTGATCAGCATGGTTCTCAGGCCAGATTCTTATTGGCAAAGTTGAATCCATCAGCAACATACAACAATGCGCAAGAAATGGCGGCCGGGTCCGATATCATATTTACTGACGACGTCAGCCTTCAAGTTTTCTTTGAGCATCTTCAGAGGTTGGCTGTGCAATCTTGA 2325 46.19 MSEMANADPEGIDGVRMSWNVWPRTKVESSKCVIPLAASIAPIRPHPEIPTLPYAPLRCKSCSAVLNPFSRVDFTAKIWICPFCYQRCHFPPHYAMISETHLPGELYPQYTTVQYAIPQSVNPNPGLDSGNPNPPPVFLFLLDTCMIEEELGFVKSALKRAIGLLPDNALVGFVSFGTQVQVYELGFSDMSKVFVFRGSKEISKDQVLEQLGLGMGGRRVGGAYQKGVQNGFPGSGVTRFLLPAAECEYTLNSLLDELQTDQWPVSPGTRASRCTGVALSVAASLLGACLPGTGARIIALVGGPCTEGPGTIVSKDLSEPVRSHKDLDKDAAPYFKKAIKFYESLAKQLVGQGHVLDLFASALDQVGVAEMKVAVEKTGGLVVLAESFGHSVFKDSFKRVFEEGEHSLGLCFNGTLEINCSKDIKIQGIIGPCTSLEKKGPAVADTVIGEGNTTMWKMCGLDKSTCLTVFFDLSSSDRTSNPGTAYPQLYLQFLTSYQDPEGQSMLRVTTVTRRWIDTPISSEELVQGFDQEAAAVVVARLTSLKMEMEEGFDAIRWLDRSLIRLCSKFGEYRKDDPSSFTLNPCFSLFPQFMFNLRRSQFVQVFNNSPDETACFRMLLNRENVTNAAVMIQPSLISYSFNSLPAPALLDVASIAADRILLLDSYFSVVVFHGMTIAQWRNMGYQTQPEHQAFAQLLQAPQDDAQIIINERFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAQEMAAGSDIIFTDDVSLQVFFEHLQRLAVQS 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48101067 48109044 + Sed0014371.1 Sed02g1076 704744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1076 774 SUPERFAMILY Zn-finger domain of Sec23/24 47 120 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Sed02g1076 774 Gene3D - 53 112 - -
Sed02g1076 774 Pfam Sec23/Sec24 helical domain 530 627 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Sed02g1076 774 Pfam Sec23/Sec24 beta-sandwich domain 412 515 IPR012990 -
Sed02g1076 774 SUPERFAMILY vWA-like 135 402 IPR036465 -
Sed02g1076 774 Gene3D - 10 513 - -
Sed02g1076 774 Gene3D Sec23/Sec24 helical domain 527 771 - -
Sed02g1076 774 FunFam Protein transport protein SEC23 53 112 - -
Sed02g1076 774 Gene3D von Willebrand factor, type A domain 135 410 IPR036465 -
Sed02g1076 774 Pfam Gelsolin repeat 642 730 IPR007123 -
Sed02g1076 774 FunFam Protein transport protein SEC23 632 736 - -
Sed02g1076 774 Pfam Sec23/Sec24 zinc finger 56 94 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Sed02g1076 774 CDD Sec23_C 622 742 IPR037550 GO:0030127(InterPro)|GO:0090114(InterPro)
Sed02g1076 774 SUPERFAMILY Helical domain of Sec23/24 530 632 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Sed02g1076 774 Pfam Sec23/Sec24 trunk domain 134 401 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Sed02g1076 774 SUPERFAMILY beta-sandwich domain of Sec23/24 8 529 - -
Sed02g1076 774 FunFam Protein transport protein SEC23 527 648 - -
Sed02g1076 774 FunFam Protein transport protein SEC23 135 411 - -
Sed02g1076 774 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 633 773 IPR036180 -
Sed02g1076 774 Gene3D Severin 632 736 IPR029006 -
Sed02g1076 774 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 7 773 IPR037364 GO:0005096(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1076 K14006 - - csv:101209792 1454.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1076 Sed-Chr2:48101067 Sed04g2133 Sed-Chr4:35528441 1.10E-287 dispersed
Sed04g1952 Sed-Chr4:34198095 Sed02g1076 Sed-Chr2:48101067 3.50E-193 transposed
Sed12g0705 Sed-Chr12:4226272 Sed02g1076 Sed-Chr2:48101067 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1024 . . . . . . . . Cmo08g00949 . Cma06g01605 . Car06g01364 . Sed02g1076 Cpe08g00118 . Bhi01g01171 Tan10g1175 Cmetu06g0798 . Hepe05g1311 . Lcy11g1275 . . . . . . . Cone14ag0547 Cone15ag0568 Cone18ag0909 Cone11ag0596 . . . Cme06g00863 . Blo07g00065 . Bda13g00305 . . . . . . . Cma08g00981 . Car08g00861 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004546 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 42