Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1078 ATGGGCGGTTTTCTCTGGACATTTGCAGTGCAAGAGATTCTCAAGAGCGCACTGCACCTCGCCGCCGACCAAATCCGCCTAGCCCGGGCTTTCAAGCCGGACCTCGCCAACCTCCGCGCCTCTCTGCTCCTCGTCGACGCCATCCTCCGCGACGTCGATCGGGCGAAATCCGATCGAGAATCGGTCAAGATTTGGGCCGCCAAGCTCCAGGATGTTGCCCTAGACGCCGAAGTTCTACTGGACGAGCTCTCCTACGAGAATCTCAGGCGCCGGATCCGCGTCCATGGAGATTCCAACAAAAGGGTACGCGATTTCTTTTCGGTTCGTAACCCTTTGGTTTTTAGGGTTCGAATGGGTCGTAAAATTAGAACTATTGTTCGTGTTTTGAATGAGATTAAAGGGGAGGCGAGCGCTGTGGGGGTTGTTTCCGATGTGGGGAATGGGGAAATGGAACGTGAGAATGGGTTGGTTCCTGAGACGGATTCGTTTCTGGATGAGTTTGAAGTTGTGGGAAGAGGGGTGGATGTGTCTAGAATAGTGAGCTTAGTGGTTGATAGTTCTATCCATGAAAAGATTTCTGTGATTCCTATTTTGGGTATGGGGGGTCTTGGGAAGACTACTTTGGCTAAAGCTGTGTTCAATCATGAGGCTGTGAAATCACATTTTGATGTTACTATTTGGGTGTGTGTGACTGCAACTTTTGATGACAGGAGGATTCTAAGAGCGATTTCGGAATCTCTTATGAATTTTCCCGGTGGTTTGGATAGTAAGGATGCTATTCTTCGAAAACTGCAGAAGGAGCTTGAAGGGAAAAGGTATTTTCTTGTGTTGGATGATGTGTGGAATGAAAATGTTAAGCTGTGGAACAATTTGATGAGTCTTTTGCTTAAGATTACTGATAGTGTTGGGAACAGAGTTCTTGTGACTACGAGGAGTGAGGAAGCTGGGAAGATTGTGAGGACGTTTCCGATTTATCGGTTAGATAAGTTATCTGATGATGAATGCTGGTCGATATTTAAGGAGAGGGCGTCTGCAAATGGACTGCCACTGACTCAAGAATTGGAAATTATGAAGAATGTGCTTGCAGAGCAGTTTGGAGGGATTCCATTGGTTGCTAAAGTCTTGGGAGGGGCTGTGCAATTTAAGACGAGACGAGAGACTTGGTTGATGTCGACATTGGAAACCCTGATTATGAATCCACTTCAAAATGAAGATGATGTTTTGTCCATTTTGAGATTAAGCGTGGATCATCTGCCAAACTCGTCGTTGAAACAGTGCTTTGCCTATTTTTCAAATTTTCCAAAGGGATTTAACTTTGAAAAGGAACAACTAATCCAATTTTGGATGGCAGAAGGGTTCATTCAACCTTACGATCAAGCAGGCACTGAAACCATGGAAGATATAGGAGACAAGTACTTCAATATCTTGCTGGCTCGTTCCTTATTTCAAGAGATTGTTAAAGATGAGAATGGTAAAATTACTCACTGTAAGATGCACCATCTTCTACATGATCTTGCATATTCTGTCTCAAAACGTGAAGCCTTGGGTTCGGATCTTGTAGGTCTAGTCGATGATGTTCCTCAAATTCGGCAATTATCCATTAGCTCCGAGCAAAATGTCACTTTGCCTTCTAGAAGGAGCCTCCAAAAGTTGCATTCTTTATTTATGGATAGAGATGTGTTTGGCCACAAGATAATAAATTTCAAGCGCTTGCGCGTTCTGAACATGTCTGGATGTGAAATCCTTAACTTGCCAACTTCAATCGGAAGGTTAAAGCATCTAAGGTATTTAGACGTGTCAAATAATATGATCAAGGAAATTCCCAAATCTATTGTTAAGCTTTACAAATTGCAGACACTGAGACTTGGTTGTTTCCATGGAGAAATCCCCAAGAAATTCAGAAAATTGATCAGCTTGCGACATTTCTATATGGATGTTCAAAGACCAACAAGTAGGCACATGCCTTCTTATTTAGGTAAATTGGTCGATCTTCAATCATGGCCTTTTTTTGTTGTTGGCATGGAGAAGGGTTCTCATATAGAAGAGCTTGGATATCTGAGCAATCTCAGAGGTAAATTAAAGCTTTACAATCTTGACTTTGTTAGAAATAAGAAGGAAGCTATGGCAGCCGAGTTGGTGAAAAAGGAAAAGGTCTACAAATTGAAACTAGTATGGAATGATGAAAGAGAAGTTTATGATAACCATGACATTGCCGTTTTAGCAGGACTTCAACCTCACAAAAATCTCCAATACTTGACAGTTGAAAACTTTATGGGAGAATTTTTTTCAAATTTTACTTTTGTTGAAAATTTGGTGAAGATTTCCCTGAAAAATTGTAAGAGATGTAGAAGAATCCCAACGTTTGGACACATCCCCAATCTTAAGGTTCTTGAGATTTCTGGATTGCACAGCCTAAAAAGTATAGGGACTGAGTTCTATGGGAACGGATTTGAAGAGAGAGGTTTGTTTCCAAAACTGAAGAGATTTCATCTTTTAGACATGGAGAATCTGGGAAGTTGGGATGAAGCAGCAGCTCCATCTGATGTTGCGGTTTTTCCTTGTCTTGAAGAGTTGAAAATTCTCGATTGTCCCAGATTAGAAATTGCTCCTGATTACTTCTCAACTCTCAGGACATTAGAAATTGATGATGTCAACAATCCAATTTCACAGATTACTCTTCAGACATTTAAGCTTCTTGGCATTATACACTCTGGCAACGTGAGTAGTTTGCCTGAGGATCTGCGTGGTAATCTGTCATCTCTCGAGGAGTTTAAGGTTTGGTATTACCTTCACTTGAAATCCTTTCCAAACATTGAGTGGATCACGGATATTCTGAAATGCAAGATCGGATATGACACAAAATGGACAAATATTCAATCTCATGAGCTGGAATCATACAGTTCTGTAAAGGAGTTGTCTATTGTTGGCTACCCTGATCAAACATCAACCCCAGATGTGGAAGCATTTTATAATCTTTCGTCTCTGACAATTACGGGCTTGAAGAAATTGCCAAAGGGATTTCACTGCCTCACTAGCCTGAAAAGTTTGTCAATTGGTGGATTCATGGAAGGGTTTGATTTTAGGCCTCTCTTACATCTTGAGTCTCTTGAAAATTTAGCATTAATAGAATTTGGAAGCACAGAGAGCACACTTCCTGACCAACTTCAGCATCTCAATAGCTTAAAGCACTTGAAAATTGTTGGCTTTCAAGGCATTGAATCTCTGCCAGAGTGGCTAAGAAATTTTACCTTATTGGAAAGTTTGCACCTTGAGAGTTGCAGAAAACTGAGAGAGCTTCCAGAAGCTATGGGTCACCTCGTCAAGTTGGAAGAGCTGCGCAGCTTCAATTGCCAAGAGCTGAGGCTTCGCCAAGAAGAACCAGAATGGGCCAAGATTTCTCACATTCCTAGATTCATATCATTCAATTATTGGGTTGATGAGGACCAACAGAGGGTTCAATTCAAAGTCTACTACAAACCTAGCTAG 3486 41.68 MGGFLWTFAVQEILKSALHLAADQIRLARAFKPDLANLRASLLLVDAILRDVDRAKSDRESVKIWAAKLQDVALDAEVLLDELSYENLRRRIRVHGDSNKRVRDFFSVRNPLVFRVRMGRKIRTIVRVLNEIKGEASAVGVVSDVGNGEMERENGLVPETDSFLDEFEVVGRGVDVSRIVSLVVDSSIHEKISVIPILGMGGLGKTTLAKAVFNHEAVKSHFDVTIWVCVTATFDDRRILRAISESLMNFPGGLDSKDAILRKLQKELEGKRYFLVLDDVWNENVKLWNNLMSLLLKITDSVGNRVLVTTRSEEAGKIVRTFPIYRLDKLSDDECWSIFKERASANGLPLTQELEIMKNVLAEQFGGIPLVAKVLGGAVQFKTRRETWLMSTLETLIMNPLQNEDDVLSILRLSVDHLPNSSLKQCFAYFSNFPKGFNFEKEQLIQFWMAEGFIQPYDQAGTETMEDIGDKYFNILLARSLFQEIVKDENGKITHCKMHHLLHDLAYSVSKREALGSDLVGLVDDVPQIRQLSISSEQNVTLPSRRSLQKLHSLFMDRDVFGHKIINFKRLRVLNMSGCEILNLPTSIGRLKHLRYLDVSNNMIKEIPKSIVKLYKLQTLRLGCFHGEIPKKFRKLISLRHFYMDVQRPTSRHMPSYLGKLVDLQSWPFFVVGMEKGSHIEELGYLSNLRGKLKLYNLDFVRNKKEAMAAELVKKEKVYKLKLVWNDEREVYDNHDIAVLAGLQPHKNLQYLTVENFMGEFFSNFTFVENLVKISLKNCKRCRRIPTFGHIPNLKVLEISGLHSLKSIGTEFYGNGFEERGLFPKLKRFHLLDMENLGSWDEAAAPSDVAVFPCLEELKILDCPRLEIAPDYFSTLRTLEIDDVNNPISQITLQTFKLLGIIHSGNVSSLPEDLRGNLSSLEEFKVWYYLHLKSFPNIEWITDILKCKIGYDTKWTNIQSHELESYSSVKELSIVGYPDQTSTPDVEAFYNLSSLTITGLKKLPKGFHCLTSLKSLSIGGFMEGFDFRPLLHLESLENLALIEFGSTESTLPDQLQHLNSLKHLKIVGFQGIESLPEWLRNFTLLESLHLESCRKLRELPEAMGHLVKLEELRSFNCQELRLRQEEPEWAKISHIPRFISFNYWVDEDQQRVQFKVYYKPS 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48116849 48121587 + Sed0008554.1 Sed02g1078 704746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1078 1161 Gene3D - 157 321 IPR027417 -
Sed02g1078 1161 PRINTS Disease resistance protein signature 566 582 - -
Sed02g1078 1161 PRINTS Disease resistance protein signature 365 379 - -
Sed02g1078 1161 PRINTS Disease resistance protein signature 194 209 - -
Sed02g1078 1161 PRINTS Disease resistance protein signature 267 281 - -
Sed02g1078 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 429 IPR027417 -
Sed02g1078 1161 ProSiteProfiles Leucine-rich repeat profile. 593 614 IPR001611 GO:0005515(InterPro)
Sed02g1078 1161 FunFam Probable disease resistance protein At1g63360 415 508 - -
Sed02g1078 1161 Pfam NB-ARC domain 190 416 IPR002182 GO:0043531(InterPro)
Sed02g1078 1161 SUPERFAMILY L domain-like 497 880 - -
Sed02g1078 1161 Gene3D - 8 123 - -
Sed02g1078 1161 Pfam Leucine Rich Repeat 593 613 IPR001611 GO:0005515(InterPro)
Sed02g1078 1161 SUPERFAMILY RNI-like 824 1117 - -
Sed02g1078 1161 Pfam Rx N-terminal domain 9 97 IPR041118 -
Sed02g1078 1161 PANTHER DISEASE RESISTANCE PROTEIN RP 35 927 IPR044974 GO:0006952(InterPro)|GO:0098542(PANTHER)
Sed02g1078 1161 Gene3D Ribonuclease Inhibitor 538 896 IPR032675 -
Sed02g1078 1161 Gene3D Ribonuclease Inhibitor 897 1143 IPR032675 -
Sed02g1078 1161 Gene3D - 410 508 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1078 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1078 Sed-Chr2:48116849 Sed12g0648 Sed-Chr12:3865572 1.50E-216 dispersed
Sed02g1078 Sed-Chr2:48116849 Sed02g1027 Sed-Chr2:47653193 1.30E-223 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1255 . . . . . . Bma04g00863 . . . . . . . Sed02g1078 . . Bhi01g01169 Tan10g1170 Cmetu09g1097 . Hepe05g1313 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000049 1 17 1 1 1 9 0 11 8 28 9 10 9 18 20 10 9 0 0 9 17 7 7 28 33 20 21 14 7 0 325