Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1101 ATGAGAGTTGGGAAGTACGAGTTGGGGAAAACTCTCGGAGAGGGCAATTTCGGAAAAGTGAAGTTGGCTGCCGACCTCCGTACCGGCCGCCGTTACGCCGTCAAGATCCTCGACAGGAACAAGATTCTCCGTCTCAACTTCTCCGATCAGATCAAGCGTGAAATCAGTACTCTCAAGCTTCTCCGACATCCGAATGTTGTTAGACTCTACGAGGTTTTAGCTAGTAGGACGAAGATTTTTATGGTTCTTGAATGCGCTACTGGTGGCGAATTGTTTGATAGAATCGAATCGAGAGGTAAAGTGGATGAAGCTGAAGGACGGAGACTATTTCAGCAGCTTATTGATGGTGTAAGCTACTGCCATGATAAAGGAGTTTGCCACAGAGATCTCAAGCTAGAAAACGTGCTTGTTGATGCTAAGGGAAACATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCACATCATTGCAGGGGAGATGGTTTGCTGCATACCACCTGTGGAAGTCCCAACTATGTAGCACCAGAGGTACTTGCTAATAAAGGATACAATGGAGCTGCCTCTGATATCTGGTCATGTGGGGTTATCTTGTATGTAATTCTCACGGGTTGTCTTCCTTTCGATGAGACCAATCTCGCTTTACTTTTAAAAAAGACTTCGAGGGGGGATTTTCAGATACCCAAATGGTTATCATCAGGTGCCAATAATTTGATAAAGAGAACTCTTGACCCCAATCACAATACACGGATTACAATGGCAGAAATTAAAAAGGATGAATGGTTCAAGATTGATTACAATCCTGCTTCTCCTTGTTATGATGATGATGAAGAGGAGGGTCCACTTATTGATCAAGATGATGCCATCTCAAAGCATGATGAGTCAAATGAGGTGGAAAACTGTCCAGAATCTCCCTCTACTATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGCCTGGATCTATCTGGCTTATTTGAGCAAGAGGATGTTTCTGAGAGGAAGGTCAGATTTACGTCCAACTTTTCTGCCAAAGAATTGCTTGAAAGAATCGAGGGTATCGCAACGGATATGGGATTTCGAGTCCAAAAGAAAAGTGGAAAGTTGAAAGTGATGCAAGAGATAAGAAGTCAAAGAAGCCTAAGTAATCTTTCATTCGAAGCCGAGGTGCTTGAGATAAGCCCATTGCTTCATGTAGTTGAATTGAAGAAATCTTTTGGAGATTCATCAGCATACAGACAGTTGTGTGAAAGGTTGTCAAATGATTTGGGCACGAACCCCAAGCTCGAACGGCTTGATTCAAGTTCATTCACATTAAACAGTACATCTTAG 1329 42.66 MRVGKYELGKTLGEGNFGKVKLAADLRTGRRYAVKILDRNKILRLNFSDQIKREISTLKLLRHPNVVRLYEVLASRTKIFMVLECATGGELFDRIESRGKVDEAEGRRLFQQLIDGVSYCHDKGVCHRDLKLENVLVDAKGNIKISDFGLSALPHHCRGDGLLHTTCGSPNYVAPEVLANKGYNGAASDIWSCGVILYVILTGCLPFDETNLALLLKKTSRGDFQIPKWLSSGANNLIKRTLDPNHNTRITMAEIKKDEWFKIDYNPASPCYDDDEEEGPLIDQDDAISKHDESNEVENCPESPSTINAFELIGMSSSLDLSGLFEQEDVSERKVRFTSNFSAKELLERIEGIATDMGFRVQKKSGKLKVMQEIRSQRSLSNLSFEAEVLEISPLLHVVELKKSFGDSSAYRQLCERLSNDLGTNPKLERLDSSSFTLNSTS 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48340440 48343391 - Sed0019873.1 Sed02g1101 704769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1101 442 Gene3D Kinase associated domain 1, KA1 301 424 - -
Sed02g1101 442 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1101 442 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Sed02g1101 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1101 442 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Sed02g1101 442 Pfam NAF domain 304 363 IPR004041 GO:0007165(InterPro)
Sed02g1101 442 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed02g1101 442 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1101 442 Gene3D Transferase(Phosphotransferase) domain 1 86 266 - -
Sed02g1101 442 CDD CIPK_C 308 419 - -
Sed02g1101 442 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 376 424 IPR001772 -
Sed02g1101 442 FunFam Non-specific serine/threonine protein kinase 304 426 - -
Sed02g1101 442 SUPERFAMILY Protein kinase-like (PK-like) 3 276 IPR011009 -
Sed02g1101 442 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165(InterPro)
Sed02g1101 442 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Sed02g1101 442 FunFam Non-specific serine/threonine protein kinase 1 304 - -
Sed02g1101 442 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1101 Sed-Chr2:48340440 Sed12g0728 Sed-Chr12:4348608 1.30E-181 dispersed
Sed09g0594 Sed-Chr9:6738672 Sed02g1101 Sed-Chr2:48340440 2.30E-149 transposed
Sed12g0727 Sed-Chr12:4347372 Sed02g1101 Sed-Chr2:48340440 5.10E-218 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78813 PF00069 Pkinase 1.30E-70 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1101 K07198 - csv:101205987 763.837