Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1104 ATGGCGGCTTTATCCAGAGGTCTCATTTCCCGTTTTCGTCTTCTCTCGATCAATTCCGGCGCCTCTCCCACAGTCACTTCATCTTCTTCTTCGTCGTTGGCGAATCCGTCTTGCCATTACTTCTTCCGTACTTTCAGTACGGAGAGTTCGATCCAGGCCGGCGTTGTTGAAGCAAAACCTGGTGTTATGACCCCTAACTCGAAGCGGACCGGCGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTTTGGGATAAATGGGGAGCTAGGGTTCCCATCACTGTGCTTTGGGTTGATGATAACATTGTGTCTCAGGTTAAGACCATTGAGAAAGAAGGCATCACAGCTCTCCAGATTGGCTGTGGACAGAAGAAGGAGAAGCATTTGACAAAACCTGAAGTAGGTCATTTTAGAGCTCAAGGTGTTCCAATGAAGAGGAAACTGAGGGAGTTTCCAGTGTCAGAAGATGCACTTCTTCCTGTCGGTACAACAATTGGTGTTCGTCATTTTGTCCCTGGACAGTTTGTTGACGTGACTGGAATCACAAGAGGGAAAGGTTTTCAGGGACCGATGAAAAGGCATCATTTTGATGGAGGTCCGGCATCCCATGGAGCGTCATTATCCCACAGATCCGGTGGTTCTACTGGTCAGAGGGATGCCCCTGGAAAGGTCTTCAAAGGTAAAAAAATGGCTGGGCGTATGGGTGGAAAGCAGAGAACTGTAAAAAATGTGTGGGTATACAAAATTGATCCAGCAAGAAACCTAATATGGGTGAGAGGACAAGTAAGTTTCTTTCTAAAACCAAATTTCAAACTTTTGTTATTGGAAACTTGGAAATTGGAGCTTCGTTCCCTTATACAAGGGGGAACCATTGGCTGTCAACTAGGCTGTGACACTGGAATACATTAG 906 46.47 MAALSRGLISRFRLLSINSGASPTVTSSSSSSLANPSCHYFFRTFSTESSIQAGVVEAKPGVMTPNSKRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLREFPVSEDALLPVGTTIGVRHFVPGQFVDVTGITRGKGFQGPMKRHHFDGGPASHGASLSHRSGGSTGQRDAPGKVFKGKKMAGRMGGKQRTVKNVWVYKIDPARNLIWVRGQVSFFLKPNFKLLLLETWKLELRSLIQGGTIGCQLGCDTGIH 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48351629 48356789 + Sed0028101.2 Sed02g1104 704772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1104 301 NCBIfam 50S ribosomal protein L3 71 261 IPR019927 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed02g1104 301 MobiDBLite consensus disorder prediction 194 231 - -
Sed02g1104 301 FunFam 50S ribosomal protein L3 99 164 - -
Sed02g1104 301 FunFam 50S ribosomal protein L3 196 264 - -
Sed02g1104 301 Hamap Large ribosomal subunit protein uL3 [rplC]. 69 275 IPR019927 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed02g1104 301 Gene3D Translation factors 197 263 - -
Sed02g1104 301 SUPERFAMILY Translation proteins 63 261 IPR009000 -
Sed02g1104 301 Gene3D - 101 164 - -
Sed02g1104 301 ProSitePatterns Ribosomal protein L3 signature. 169 192 IPR019926 -
Sed02g1104 301 PANTHER 50S RIBOSOMAL PROTEIN L3 35 261 IPR019927 GO:0003735(PANTHER)|GO:0003735(InterPro)|GO:0005762(PANTHER)|GO:0005840(InterPro)|GO:0006412(InterPro)
Sed02g1104 301 Pfam Ribosomal protein L3 167 250 IPR000597 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1104 K02906 - - csv:101205048 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1104 Sed-Chr2:48351629 Sed12g0736 Sed-Chr12:4381279 8.30E-111 dispersed
Sed02g1103 Sed-Chr2:48351629 Sed02g1104 Sed-Chr2:48351629 4.00E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g260 . Blo12g00372 Bda03g00838 . Bpe04g00793 . Bma04g00736 . . . . . Car06g01348 . Sed02g1104 Cpe08g00132 . Bhi01g01131 Tan10g1125 Cmetu06g1995 . Hepe05g1343 . Lcy11g1303 . . . . . . . Cone14ag0677 Cone15ag0688 . . Lsi05g01384 . . Cme06g00832 . . . . . . . . . Cmo06g01582 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011772 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 3 1 1 30