Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1116 ATGGCGACGGAGACTTCGACGCAGGCCTACGGCGAGCCCTCGTATTGGGACGATCGCTATTCCAACGATTCCGATCCGTTCGATTGGTACCAGAAGTACCACTCCATGGCGCCGTTGATCAATCTCTACGCCTCTCGCTCTCATCGCATCCTCGCCGTCGGATGCGGCAACTCAGAATTTAGTGAAGGCATGGTGGATGATGGTTATGAGGATGTGATCAATGTCGATATCTCTTCGGTTGTGATCGAAGCAATGCAGAAGAAGTATTGTAATCGCCCGCAGCTGAAATATGTGAAAATGGATGTTCTTGATATGAGCGCATTTGAAACATGTTCTTTCAACACCGTTCTTGATAAAGGGACCCTAGACTCTCTCTTGTGTGGACATAATTCACGACGAAATGCGACTAAGATGCTTGAAGAAATTTGGAGGGTCCTAAAGGAAAATGGAGTATATATTTTGGTAAATTCTGTAATTATTACTCTTCCCAGTTTTCTTGAATTTGTTTTGAAGTGTTTTTTTTTAAACCTTGTTTGTAAGTGCTATTATACAACGAATAATCACTCTGTTTTGGTGGTTGTTCTTATGGTAATCACGAATCTGCAGGTTACATATGGAGCTCCCATCCATAGACTAACTCTATTGAGACGTACCTTCACATTGATAAAGCTTCATGTCATAGAGAAACTTGCTTCTGAGAAAAGGACCGACCCTCCAAAATGGGACCTGTTGAAACCTGTTCCATACGATATCGATGGAACCTCGCTAGAAACCGCGCTCGGGCAGTATCCTGATGTCCACTATATATACATCTGTACCAAGGATAGTTCTTTGAAACCAGATCAAAAGCATTATGTTGCCGTTAAGTGA 870 42.87 MATETSTQAYGEPSYWDDRYSNDSDPFDWYQKYHSMAPLINLYASRSHRILAVGCGNSEFSEGMVDDGYEDVINVDISSVVIEAMQKKYCNRPQLKYVKMDVLDMSAFETCSFNTVLDKGTLDSLLCGHNSRRNATKMLEEIWRVLKENGVYILVNSVIITLPSFLEFVLKCFFLNLVCKCYYTTNNHSVLVVVLMVITNLQVTYGAPIHRLTLLRRTFTLIKLHVIEKLASEKRTDPPKWDLLKPVPYDIDGTSLETALGQYPDVHYIYICTKDSSLKPDQKHYVAVK 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48375295 48378725 + Sed0020024.4 Sed02g1116 704784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1116 289 CDD AdoMet_MTases 49 155 - -
Sed02g1116 289 Gene3D Vaccinia Virus protein VP39 8 190 IPR029063 -
Sed02g1116 289 Pfam Methyltransferase domain 51 153 IPR013216 GO:0008757(InterPro)
Sed02g1116 289 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 8 157 IPR029063 -
Sed02g1116 289 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 6 277 IPR051419 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1116 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1114 Sed-Chr2:48375295 Sed02g1116 Sed-Chr2:48375295 2.50E-134 dispersed
Sed02g1116 Sed-Chr2:48375295 Sed12g0747 Sed-Chr12:4428803 9.10E-115 dispersed
Sed02g1115 Sed-Chr2:48375295 Sed02g1116 Sed-Chr2:48375295 8.90E-95 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g246 . . . . . . . . . . . Cma14g01563 . Car14g01380 Sed02g1116 . Cpe03g01308 Bhi01g01121 Tan10g1110 Cmetu06g2692 . Hepe05g1350 . Lcy11g1311 . . . . . . . . . . . Lsi05g01392 . . Cme06g00825 . . . . . . . . . . Cmo14g01599 . . Car08g01105 . Cpe12g00279 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007366 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 35