Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1128 ATGGCGAAGCACGAGGACCTTCCAGTTCCTGTTTTCTCTTCTCTAGAACCGGTTTATGGCGATGGATCTCAGCACGAAGAAGCTCGCCTTCGATTTGACCATCTCAAGGCTAAGTTTCTCCAAGTTTTCGGCCATCCTCCCGATCGTATTGCTCGTTCTCCAGGGAGAGTGAACTTGATCGGAGAGCACATTGATTATGAAGGATATTCGGTGTTGCCGATGGCGATTCGGCAAGACACGATCGTCGCGATACGGAAGCACGATGCTAAAGAGGCGGAGCATCTTCTCAGAATTGCTAATGTTAATGATAAGTACTCGATGTGTACTTATCCTGCTGATCCTGATCAGGAAGTTGACTTGAAGAATCACAAATGGGGACACTATTTCCTCTGCGGGTACAAAGGCTATTACGAATTTGCTAAATCAAAAGGCCAAGATGTTGGCGTGCCAGTTGGACTTGACGTTCTTGTTGATGGAACAGTGCCTACAGGATCTGGATTATCAAGCTCCGCCGCATTTGTTTGCTCTTCTACCATTGCTATAATGGCTGTTTTTGGTGCCAACTTTCCCAAGAAAGAACTCGCCCAACTTACCTGTGAATGTGAACGGCACATTGGTACACAATCTGGTGGTATGGACCAGGCAATCTCTGTCATGGCCAAATCTGGGTTTGCAGAGCTGATTGATTTCAATCCTATTCGTGCTACTGATGTGCAACTTCCTGCCGGTGGGACTTTTGTTATAGCCCATTCGCTAGCCGAATCACAGAAAGCAGTCACTGCTGCCACAAATTATAATAACAGAGTTGTGGAATGCCGACTTGCTGCTATTATTCTAGGCATAAAGCTTGGGATGAAACCACAAGATGCAATAGCAGAAATGAAGACTTTATCTGATGTGGAAGGGCTTTGTCTTACATTTGCTAAGGAGCGGAATTCTTCAGATCCTGTGCTTGCAGTCAAGGAACTGTTGAAGGAGGAACCTTATACAGCTGAAGATATTGAACAAATCACTGTGGATAATCTGCCTTCCGTTTTGGGCAATTCTCCAACTTCATTAGATGTTCTAAAAGCTGCAAAGCATTTCAAGTTGTATCAGCGAGCGTCCCACGTGTACTCCGAAGCCAAACGAGTCTATGCTTTCAAGGATGCAGTTTCGTCGAGTTTAAGTGAGGAAGACAAGCTTAAGAAACTTGGTGATCTTATGAATGATAGCCACCACAGCTGTAGCGTTCTTTATGAATGCAGTTGTCCCGAATTGGAGGAACTCGTAAAGATATGCCGGGACAACAGTGCTCTCGGGGCCAGGCTAACTGGAGCGGGATGGGGAGGCTGCACAGTCTCTCTCGTAAAAGAGGCCATTGTTCCCCAGTTCATTCTCGATCTAAAGGAAAAATTTTACCAATCGAGGATCGACAGAGGGATCATCAACAAGAACGACCTCGGTCTATACGTATTTGCATCCAAGCCATCGAGCGGAGCTGCCATCTTCCAATTTTAG 1500 45.87 MAKHEDLPVPVFSSLEPVYGDGSQHEEARLRFDHLKAKFLQVFGHPPDRIARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDAKEAEHLLRIANVNDKYSMCTYPADPDQEVDLKNHKWGHYFLCGYKGYYEFAKSKGQDVGVPVGLDVLVDGTVPTGSGLSSSAAFVCSSTIAIMAVFGANFPKKELAQLTCECERHIGTQSGGMDQAISVMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLAAIILGIKLGMKPQDAIAEMKTLSDVEGLCLTFAKERNSSDPVLAVKELLKEEPYTAEDIEQITVDNLPSVLGNSPTSLDVLKAAKHFKLYQRASHVYSEAKRVYAFKDAVSSSLSEEDKLKKLGDLMNDSHHSCSVLYECSCPELEELVKICRDNSALGARLTGAGWGGCTVSLVKEAIVPQFILDLKEKFYQSRIDRGIINKNDLGLYVFASKPSSGAAIFQF 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48475031 48482159 - Sed0008581.2 Sed02g1128 704796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1128 499 Pfam Galactokinase galactose-binding signature 38 86 IPR019539 -
Sed02g1128 499 SUPERFAMILY GHMP Kinase, C-terminal domain 245 472 IPR036554 -
Sed02g1128 499 FunFam galactokinase-like isoform X1 37 238 - -
Sed02g1128 499 ProSitePatterns GHMP kinases putative ATP-binding domain. 161 172 IPR006203 GO:0005524(InterPro)
Sed02g1128 499 NCBIfam galactokinase 34 472 IPR000705 GO:0004335(InterPro)|GO:0005524(InterPro)|GO:0006012(InterPro)|GO:0046835(InterPro)
Sed02g1128 499 ProSitePatterns Galactokinase signature. 55 66 IPR019741 -
Sed02g1128 499 PRINTS Galactokinase signature 152 170 IPR000705 GO:0004335(InterPro)|GO:0005524(InterPro)|GO:0006012(InterPro)|GO:0046835(InterPro)
Sed02g1128 499 PRINTS Galactokinase signature 55 73 IPR000705 GO:0004335(InterPro)|GO:0005524(InterPro)|GO:0006012(InterPro)|GO:0046835(InterPro)
Sed02g1128 499 PRINTS Galactokinase signature 366 380 IPR000705 GO:0004335(InterPro)|GO:0005524(InterPro)|GO:0006012(InterPro)|GO:0046835(InterPro)
Sed02g1128 499 FunFam Galactokinase 264 414 - -
Sed02g1128 499 Gene3D - 239 468 - -
Sed02g1128 499 PIRSF Galactokinase 22 499 IPR006206 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0016301(InterPro)|GO:0016773(InterPro)
Sed02g1128 499 PRINTS Mevalonate kinase family signature 159 181 - -
Sed02g1128 499 PRINTS Mevalonate kinase family signature 201 220 - -
Sed02g1128 499 PRINTS Mevalonate kinase family signature 434 451 - -
Sed02g1128 499 PRINTS Mevalonate kinase family signature 53 77 - -
Sed02g1128 499 Pfam GHMP kinases N terminal domain 154 220 IPR006204 GO:0005524(InterPro)
Sed02g1128 499 SUPERFAMILY Ribosomal protein S5 domain 2-like 28 242 IPR020568 -
Sed02g1128 499 Gene3D - 264 414 - -
Sed02g1128 499 Pfam GHMP kinases C terminal 395 467 IPR013750 -
Sed02g1128 499 Gene3D - 37 238 IPR014721 -
Sed02g1128 499 PANTHER MEVALONATE KINASE/GALACTOKINASE 24 495 - GO:0004335(PANTHER)|GO:0005829(PANTHER)|GO:0006012(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1128 K18674 - - csv:101222674 914.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1128 Sed-Chr2:48475031 Sed12g0761 Sed-Chr12:4592578 3.30E-274 dispersed
Sed02g1127 Sed-Chr2:48475031 Sed02g1128 Sed-Chr2:48475031 1.30E-291 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g44 . . . . . Bpe14g01089 . . . . Cma06g01572 Cma14g01579 Car06g01336 Car14g01390 Sed02g1128 Cpe08g00143 Cpe03g01318 Bhi01g01101 Tan10g1088 Cmetu06g1064 . Hepe05g1365 . Lcy11g1328 . . . . . . . . Cone15ag0720 . . Lsi05g01410 . . Cme06g00801 Blo02g00471 Blo07g00132 . Bda13g00226 . . Bma02g00937 . . Cmo06g01566 Cmo14g01611 . . . . . . . . . . . . . Cla05g00717 Cam05g0784 Cec05g0790 Cco05g0786 Clacu05g0774 Cmu05g0739 Cre05g0813 . Csa03g01530 Chy06g00767 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005121 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 41