Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1129 | ATGGATGGATCCAAGATGGAGAAGAAATGTGAAGACTCATTAATGGGGTTGGAAAATTCAGCCGGAATTTTCTCACCGGATTTTTTTTCCGATGGTTTTTCCGGTATGTTCGACATGCCATGTGATGATCATAAAGCTTCTTGTTCTTCTTCTTTTGACTTGTTTGGTGGTGGAATCGAAATCCATGATTTTTATAATCCTTCTTTGTTCGATTTGATGTCTACGGCGGCGCCGCCGCTTTCCTCGCCGGCCTCCACCGTGCCGGAGTCGTCGGAGGGGCTTAATGCTCCGGCCACGCCTAATTCGTCCTCCGTTTCTAATTCGTCTTCCAATGAAGCTGCTGCCATTGAAGAGGTTGCAAAGAACATCACTGAGAAGACTTCTAATGCGTTGATGCCAAAAAAGAAGAACCAGAAGAAGCCAAGAGAACCCAGATTTGCTTTCATGACGAAAAGTGATATCGATCATCTCGACGATGGTTACCGGTGGCGAAAGTACGGTCAAAAGGCCGTGAAGAATAGTCCTTATCCCAGAAGCTATTATCGTTGCACCACAGCAGGGTGCGGAGTGAAGAAGAGGGTGGAGAGGTCGTCGGGCGACCATTCGATCGTTGTCACGACGTATGAAGGACAACACACTCACCAAAGTCCAGTAATGCCACGAGGAAGCATCCGAGTCCTACCGGAACCCACCAACTATCTTATCACTGATCACGCCACCGAACTATGCTTCCAACACAAGAATCCCGGCCAGCCCTTCATGTACGACCCTCCTCGGCCGCCATTTTTAACAATCAACTCGGCTTCGATGAGTCCCCATCCGCCCTCCTCCCTTGCTCCATCATCGTCGTTGCCATCGTCGTCTCAAGCTTCCTTGCTTCGAGACCACGGGCTTTTGCAGGATTTGGTTTCATTGCAAATGAGGAAGGAACAAAAGGATGAACAAAATGGATGA | 954 | 48.64 | MDGSKMEKKCEDSLMGLENSAGIFSPDFFSDGFSGMFDMPCDDHKASCSSSFDLFGGGIEIHDFYNPSLFDLMSTAAPPLSSPASTVPESSEGLNAPATPNSSSVSNSSSNEAAAIEEVAKNITEKTSNALMPKKKNQKKPREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHSIVVTTYEGQHTHQSPVMPRGSIRVLPEPTNYLITDHATELCFQHKNPGQPFMYDPPRPPFLTINSASMSPHPPSSLAPSSSLPSSSQASLLRDHGLLQDLVSLQMRKEQKDEQNG | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 48492949 | 48494949 | - | Sed0010981.1 | Sed02g1129 | 704797 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1129 | 317 | Pfam | WRKY DNA -binding domain | 158 | 215 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1129 | 317 | Gene3D | WRKY domain | 143 | 218 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1129 | 317 | MobiDBLite | consensus disorder prediction | 80 | 113 | - | - | |
Sed02g1129 | 317 | MobiDBLite | consensus disorder prediction | 264 | 294 | - | - | |
Sed02g1129 | 317 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 95 | 223 | IPR044810 | GO:0003700(InterPro) | |
Sed02g1129 | 317 | MobiDBLite | consensus disorder prediction | 250 | 295 | - | - | |
Sed02g1129 | 317 | FunFam | WRKY transcription factor 57 | 143 | 217 | - | - | |
Sed02g1129 | 317 | ProSiteProfiles | WRKY domain profile. | 152 | 217 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1129 | 317 | SUPERFAMILY | WRKY DNA-binding domain | 149 | 217 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed02g1129 | 317 | SMART | WRKY_cls | 157 | 216 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1129 | Sed-Chr2:48492949 | Sed05g1272 | Sed-Chr5:23853056 | 1.20E-40 | dispersed | |
Sed04g3085 | Sed-Chr4:41837200 | Sed02g1129 | Sed-Chr2:48492949 | 6.30E-57 | transposed | |
Sed12g0763 | Sed-Chr12:4605024 | Sed02g1129 | Sed-Chr2:48492949 | 4.30E-126 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37601 | PF03106 | WRKY | 1.10E-25 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1129 | - | - | - | 0.0 |