Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1129 ATGGATGGATCCAAGATGGAGAAGAAATGTGAAGACTCATTAATGGGGTTGGAAAATTCAGCCGGAATTTTCTCACCGGATTTTTTTTCCGATGGTTTTTCCGGTATGTTCGACATGCCATGTGATGATCATAAAGCTTCTTGTTCTTCTTCTTTTGACTTGTTTGGTGGTGGAATCGAAATCCATGATTTTTATAATCCTTCTTTGTTCGATTTGATGTCTACGGCGGCGCCGCCGCTTTCCTCGCCGGCCTCCACCGTGCCGGAGTCGTCGGAGGGGCTTAATGCTCCGGCCACGCCTAATTCGTCCTCCGTTTCTAATTCGTCTTCCAATGAAGCTGCTGCCATTGAAGAGGTTGCAAAGAACATCACTGAGAAGACTTCTAATGCGTTGATGCCAAAAAAGAAGAACCAGAAGAAGCCAAGAGAACCCAGATTTGCTTTCATGACGAAAAGTGATATCGATCATCTCGACGATGGTTACCGGTGGCGAAAGTACGGTCAAAAGGCCGTGAAGAATAGTCCTTATCCCAGAAGCTATTATCGTTGCACCACAGCAGGGTGCGGAGTGAAGAAGAGGGTGGAGAGGTCGTCGGGCGACCATTCGATCGTTGTCACGACGTATGAAGGACAACACACTCACCAAAGTCCAGTAATGCCACGAGGAAGCATCCGAGTCCTACCGGAACCCACCAACTATCTTATCACTGATCACGCCACCGAACTATGCTTCCAACACAAGAATCCCGGCCAGCCCTTCATGTACGACCCTCCTCGGCCGCCATTTTTAACAATCAACTCGGCTTCGATGAGTCCCCATCCGCCCTCCTCCCTTGCTCCATCATCGTCGTTGCCATCGTCGTCTCAAGCTTCCTTGCTTCGAGACCACGGGCTTTTGCAGGATTTGGTTTCATTGCAAATGAGGAAGGAACAAAAGGATGAACAAAATGGATGA 954 48.64 MDGSKMEKKCEDSLMGLENSAGIFSPDFFSDGFSGMFDMPCDDHKASCSSSFDLFGGGIEIHDFYNPSLFDLMSTAAPPLSSPASTVPESSEGLNAPATPNSSSVSNSSSNEAAAIEEVAKNITEKTSNALMPKKKNQKKPREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHSIVVTTYEGQHTHQSPVMPRGSIRVLPEPTNYLITDHATELCFQHKNPGQPFMYDPPRPPFLTINSASMSPHPPSSLAPSSSLPSSSQASLLRDHGLLQDLVSLQMRKEQKDEQNG 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48492949 48494949 - Sed0010981.1 Sed02g1129 704797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1129 317 Pfam WRKY DNA -binding domain 158 215 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1129 317 Gene3D WRKY domain 143 218 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1129 317 MobiDBLite consensus disorder prediction 80 113 - -
Sed02g1129 317 MobiDBLite consensus disorder prediction 264 294 - -
Sed02g1129 317 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 223 IPR044810 GO:0003700(InterPro)
Sed02g1129 317 MobiDBLite consensus disorder prediction 250 295 - -
Sed02g1129 317 FunFam WRKY transcription factor 57 143 217 - -
Sed02g1129 317 ProSiteProfiles WRKY domain profile. 152 217 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1129 317 SUPERFAMILY WRKY DNA-binding domain 149 217 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed02g1129 317 SMART WRKY_cls 157 216 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1129 Sed-Chr2:48492949 Sed05g1272 Sed-Chr5:23853056 1.20E-40 dispersed
Sed04g3085 Sed-Chr4:41837200 Sed02g1129 Sed-Chr2:48492949 6.30E-57 transposed
Sed12g0763 Sed-Chr12:4605024 Sed02g1129 Sed-Chr2:48492949 4.30E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37601 PF03106 WRKY 1.10E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1129 - - - 0.0