Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1137 ATGAAAATGATTTTTATTCCCCACAATAATTCTCATTCTCCTTCTTTCTTCTCTTCTTCTCCTTCGACCACGAGCTTCAATCTCTTCTCGAAATACCGATGCAAAATTTCCGCTCCGATTCCGCTCCATTCCGCTCCGATCTCCCTTTCCGTTTGCTGTTCTTCGAGGGAGGCTTCGACGGGGGTCATCGCCGGAGATCGGACGTCGGATGAGGCTCTTACGGTTCGGCGGCCGGTATTGGAGTTTTCCGGCGAGGATGTGGAGGAGGATGCGAGAGGTGAGAAGAGATATTCGGTGGTGGAATTAGGGCTGGCGGAGATTGCGAAGAAGATGCCGATATTTGAACCGGAGAATCGGGTGGATTCGAGTGCCCTAGATCGGCCGCTGATTATCAATTTGGATCTGGCGCTGTACAGAGCGAAAATGCTGGCAAGGAATTTCCTGTATAATGAAGCACGGCAAGTTCTTCAGAAGTGTATAGATAAATGGGCAGAGGATGGGCGGGCATACGTAGCGTTGGGGAAGATGTTGGGGAAGCAAATGAAAACAGCTGAAGCCAGAGCTGTGTATGAGAGAGGCTGCCAAGCCACCCAAGGAGAAAACTCCTACATTTGGCAGTGTTGGGCAGTTCTCGAGAGCAGGGTGGGGAACATCAGGAAGGCAAGAGAGCTGTTTGATGCAGCCACAGTAGCCAACAAGAAGCACGCTGCAGCATGGCATGGCTGGGCTGTGCTAGAGCTCAAGCAGGGGAACATCAAGAAGGCCAGGAATTTACTAGCCAAAGGCCTCAAATACTGTGGTGGAAATGAGTATATCTATCAAACACTAGCACTACTAGAAGCGAAATCGAATCGGTACGAGCAGGCTCGCTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAGAGCTGTGCTAGTTGGCTTGCATGGGCGCAGCTGGAGATGCAGCAGGAGAACAATCTTCTTGCTAGAGAACTATTTGAGAAAGCCATCCAGGCAAGCCCAAAGAACAGATTTGCGTGGCATATATGGGGACTCTTTGAAGCTAACACTGGAAACATCGAGAAGGGAAGAAAGCTCTTAAAGATAGGCCATGTCTTAAATCCAAGAGACCCTGTTCTTCTCCAGTCCCTTGGTTTATTGGAGTACAAGAACTCATCTGCAAGCCTGGCTCGAGTTTTGTTTCGAAGAGCATCTGAACTGGATCCAAAGCACCAACCTGTGTGGATTGCATGGGGATGGATGGAATGGAAAGAAGGGAATATAGCAAAAGCAAGGGAGCTGTATCAAAGAGCATTGATCATTGATTCAGATACTGAAAGTGCAGCTCGATGCCTTCAGGCTTGGGGTGTTCTAGAGCAGAGATTAGGCAATCTATCAGCAGCAAGAAGATTATATAGAACCTCTCTAAACATAAATTCTCAGAGTTATGTAACATGGATGACATGGGCATCATTGGAAGAGGATCAAGGGAATGCAATCCGAGCCGAGGAAATTCGAAATCTATATTTCCAGCAGAGAACTGAAGTTGTGGATGATGCTTCATGGGTTATGGGATTTTTAGACGTTATAGACCCAGCACTGGACAGCATAAAAAGACTATTGAAGCTGGAGCAAGACCCTTTCACCGTGTCTAGAGCAGCCGACGGAGGCACTCGAAACGCCTCGGTTGACGACTCGGCTGCCTCCTCTTCTTATAACAATGTAGTTGAAAAAAATCTTATAAATAATTTAAAACATTACTTTTTGTTTCCCCTACAAATCCGCGCTAATTTGCCAATCTCCTTCCAGCTGAAAATGAACATCAAATTTAGGGCTCAGAAATGGGTTAATTCGAGTGTGAACCTGAATCGAACTCAGTGA 1863 46.97 MKMIFIPHNNSHSPSFFSSSPSTTSFNLFSKYRCKISAPIPLHSAPISLSVCCSSREASTGVIAGDRTSDEALTVRRPVLEFSGEDVEEDARGEKRYSVVELGLAEIAKKMPIFEPENRVDSSALDRPLIINLDLALYRAKMLARNFLYNEARQVLQKCIDKWAEDGRAYVALGKMLGKQMKTAEARAVYERGCQATQGENSYIWQCWAVLESRVGNIRKARELFDAATVANKKHAAAWHGWAVLELKQGNIKKARNLLAKGLKYCGGNEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQQENNLLARELFEKAIQASPKNRFAWHIWGLFEANTGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASLARVLFRRASELDPKHQPVWIAWGWMEWKEGNIAKARELYQRALIIDSDTESAARCLQAWGVLEQRLGNLSAARRLYRTSLNINSQSYVTWMTWASLEEDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGFLDVIDPALDSIKRLLKLEQDPFTVSRAADGGTRNASVDDSAASSSYNNVVEKNLINNLKHYFLFPLQIRANLPISFQLKMNIKFRAQKWVNSSVNLNRTQ 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48576897 48585581 + Sed0008833.1 Sed02g1137 704805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1137 620 Gene3D Tetratricopeptide repeat domain 371 518 IPR011990 GO:0005515(InterPro)
Sed02g1137 620 SMART tpr_5 372 405 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 SMART tpr_5 304 337 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 SMART tpr_5 406 439 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 SMART tpr_5 270 303 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 SMART tpr_5 443 476 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 SMART tpr_5 236 269 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 SMART tpr_5 167 200 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 SMART tpr_5 202 235 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 SUPERFAMILY TPR-like 151 382 IPR011990 GO:0005515(InterPro)
Sed02g1137 620 SMART hat_new_1 352 384 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SMART hat_new_1 284 316 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SMART hat_new_1 181 214 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SMART hat_new_1 457 489 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SMART hat_new_1 216 248 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SMART hat_new_1 420 455 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SMART hat_new_1 386 418 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SMART hat_new_1 250 282 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SMART hat_new_1 318 350 IPR003107 GO:0006396(InterPro)
Sed02g1137 620 SUPERFAMILY TPR-like 341 502 IPR011990 GO:0005515(InterPro)
Sed02g1137 620 Gene3D Tetratricopeptide repeat domain 166 370 IPR011990 GO:0005515(InterPro)
Sed02g1137 620 ProSiteProfiles TPR repeat profile. 270 303 IPR019734 GO:0005515(InterPro)
Sed02g1137 620 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 13 565 IPR044624 GO:0003727(PANTHER)|GO:0003729(InterPro)|GO:0006397(InterPro)|GO:0006397(PANTHER)|GO:0006417(PANTHER)|GO:0009507(PANTHER)
Sed02g1137 620 Pfam Tetratricopeptide repeat 212 260 - -
Sed02g1137 620 Pfam Tetratricopeptide repeat 276 337 - -
Sed02g1137 620 Pfam Tetratricopeptide repeat 378 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1137 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g70 . . . . . . . . . . Cma06g01562 . Car06g01327 . Sed02g1137 Cpe08g00151 . Bhi01g01088 Tan10g1075 Cmetu06g0442 . Hepe05g1383 . Lcy11g1338 . . . . . . . . . Cone7ag0100 . Lsi05g01595 . . Cme06g00788 . Blo07g00145 Bda11g00502 . . Bpe13g00695 . . . Cmo06g01559 . . . . . . . . . . . . . . Cla05g00705 Cam05g0772 Cec05g0780 Cco05g0773 Clacu05g0762 Cmu05g0728 Cre05g0802 . Csa03g01517 Chy06g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011618 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 30