Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1151 ATGTCTACGGCCAGTTCGAGCTCTGTTCGGAAACCTAGTGAAGCTGTTCCCGACCAGTTTCCGGTTGGTCTTCGTGTTCTTGTTGTTGATGATGATCCGACCTGTCTTATTATCTTGGAGAGGATGCTTCGTATTTGTCGATATGAAGTGACGAAATGTAGTCGAGCCGAGGATGCACTGTCGCTACTCAGGCAGTACAAAAACGGGTTCGATGTTGTTTTGAGTGATGTTCACATGCCTGACATGGATGGATTCAAACTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTAATCATGATGTCGGTGGATGATGGGAAAAACGTCGTGATGAAGGGAGTGACCCATGGTGCTTGTGACTATTTGATAAAACCTGTTCGAATTGAAGAGTTGAAGAACATATGGCAGCATGTTGTTCGCAAGAGGAAGAACGAATTGAAGGACTTGGAGCAATCGGGTGTTGAGGATGCAGATCGGCAGCAAAAAACAAATGAAGAAGCAGAATATTCATCATCTGCTAATGAAGGAAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGAAGATGCTGAGGAGAGGGATGATTCATCAACCTTAAAGAAACCGAGGGTCGTTTGGTCCGTTGAGCTACATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTACCTGAGACGACTAAGTGGAATGACTCAACACCAGAGTAATTTGAACAACACATTCATGAGTGCCCAAGATCCATTTGGCCCTTCACTGAGCGGGCTTGATCTTCAAACTCTCGCCGCTGCCGGTCAACTCCAGCCACAAAGCCTTGCTACACTCCAAGCAGCTGGATTTGGTAGGTCCACGGCAAAATCAGGCATGCCTATGCCCCTTGTTGATCAAAGGAACCACATCTTTAGCTTTGAAAATCCGAAGTTGAGATTCGGTGATGGACAGCAGCCACATTTGAATGGTAGTAAACCAATAAATCTACTTCACGGAATCCCAACGACAATGGAACCGAAACAACTAGCTAATCTGCAGCATTCTGCACAGTCTCATGGAAACATGACGATGCAAGCTTGCACCCAAGGAGGCCAAGCTAGCTCTCAACTCATGCAGACACCTCAACCACAAGCTAGACCACAGATCCTAAACGAAAGCAATGCAGCTAGCGTTACAAGGCTTCCGCCGACAATACAGCAATCAATTTTACCAAATGGAACTGCTGGTGCGGTTTTGGCTAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTATAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTTCCCATGAGCCAGACTGCAGAATTGCCTGGTAACAGTTTTCCTCTTCAAAGTACACCAGGAATATCAAGCACTGTACCAAAGGGAAGATTCCCAGACGAGGTTAACTCGGACATCAAAGGACCTGATGTTTTTATGCCAAGCTTTGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACACGTAGGCATGACCTTCGATGCGTCTCAAGGTAGTCTCGACATTCCACCATCAGCATTTGCTCATCAAGGGTATCCCTCTAGCCAACAAAATGGACAAAACAGGAACACATATACAGCAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAATGACAATGGGAATGCACGAAGTATGGGTCAACAACTCAACCCTCTTTTCGTTGACGGTTCGGTGAGAGTTAAAGTGGAAAAAGCTTCTGAAACTAGCAGTCAAAATGACATTTTCTCTGATCACTTCGGTCAGGAGGACCTAATGAGTGCACTCCTTAAGCAGCAACAGGGAAGCATTGCGGTAGCTGAAAGTGAGTTGGAATGGGTATTTCATCATAATACTCCTGTTTAG 1980 45.15 MSTASSSSVRKPSEAVPDQFPVGLRVLVVDDDPTCLIILERMLRICRYEVTKCSRAEDALSLLRQYKNGFDVVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEELKNIWQHVVRKRKNELKDLEQSGVEDADRQQKTNEEAEYSSSANEGSWRNSKRRKDDVEDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGMTQHQSNLNNTFMSAQDPFGPSLSGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPINLLHGIPTTMEPKQLANLQHSAQSHGNMTMQACTQGGQASSQLMQTPQPQARPQILNESNAASVTRLPPTIQQSILPNGTAGAVLARNEFANNSRGGGYNLVSPASTMLNFPMSQTAELPGNSFPLQSTPGISSTVPKGRFPDEVNSDIKGPDVFMPSFDMFRDLHPQKPDWDLQHVGMTFDASQGSLDIPPSAFAHQGYPSSQQNGQNRNTYTAGKAMFLLEEGNDNGNARSMGQQLNPLFVDGSVRVKVEKASETSSQNDIFSDHFGQEDLMSALLKQQQGSIAVAESELEWVFHHNTPV 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48668430 48672367 - Sed0000534.1 Sed02g1151 704819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1151 659 PIRSF RR_ARR_type-B 3 649 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Sed02g1151 659 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Sed02g1151 659 CDD REC_typeB_ARR-like 26 140 - -
Sed02g1151 659 FunFam Two-component response regulator 199 262 - -
Sed02g1151 659 Pfam Myb-like DNA-binding domain 205 255 IPR001005 -
Sed02g1151 659 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
Sed02g1151 659 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677(InterPro)
Sed02g1151 659 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 316 IPR045279 GO:0009736(InterPro)
Sed02g1151 659 SUPERFAMILY CheY-like 23 148 IPR011006 -
Sed02g1151 659 MobiDBLite consensus disorder prediction 151 166 - -
Sed02g1151 659 MobiDBLite consensus disorder prediction 151 200 - -
Sed02g1151 659 Gene3D - 200 262 - -
Sed02g1151 659 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Sed02g1151 659 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Sed02g1151 659 FunFam Two-component response regulator 24 160 - -
Sed02g1151 659 Gene3D - 24 162 - -
Sed02g1151 659 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 202 259 IPR017930 -
Sed02g1151 659 MobiDBLite consensus disorder prediction 179 200 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1151 Sed-Chr2:48668430 Sed12g0795 Sed-Chr12:4870388 6.10E-292 dispersed
Sed02g1151 Sed-Chr2:48668430 Sed02g1152 Sed-Chr2:48668430 0.00E+00 tandem
Sed12g0794 Sed-Chr12:4870388 Sed02g1151 Sed-Chr2:48668430 0.00E+00 wgd
Sed02g1151 Sed-Chr2:48668430 Sed04g1768 Sed-Chr4:32307521 2.60E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37604 PF00072 Response_reg 8.10E-23 CL0304 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1151 K14491 - csv:101209013 1183.7