Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1152 ATGATTTTTTGCTTGATGGACTGGTTGTTTCTAATGAGCGGGAGGACTTGTGTAGTGATGTCGGTGGATGATGGGAAAAACGTCGTGATGAAGGGAGTGACCCATGGTGCTTGTGACTATTTGATAAAACCTGTTCGAATTGAAGAGTTGAAGAACATATGGCAGCATGTTGTTCGCAAGAGGAAGAACGAATTGAAGGACTTGGAGCAATCGGGTGTTGAGGATGCAGATCGGCAGCAAAAAACAAATGAAGAAGCAGAATATTCATCATCTGCTAATGAAGGAAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGAAGATGCTGAGGAGAGGGATGATTCATCAACCTTAAAGAAACCGAGGGTCGTTTGGTCCGTTGAGCTACATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAATGTTGCCAGTCACCTTCAGAAATATCGCTTGTACCTGAGACGACTAAGTGGAATGACTCAACACCAGAGTAATTTGAACAACACATTCATGAGTGCCCAAGATCCATTTGGCCCTTCACTGAGCGGGCTTGATCTTCAAACTCTCGCCGCTGCCGGTCAACTCCAGCCACAAAGCCTTGCTACACTCCAAGCAGCTGGATTTGGTAGGTCCACGGCAAAATCAGGCATGCCTATGCCCCTTGTTGATCAAAGGAACCACATCTTTAGCTTTGAAAATCCGAAGTTGAGATTCGGTGATGGACAGCAGCCACATTTGAATGGTAGTAAACCAATAAATCTACTTCACGGAATCCCAACGACAATGGAACCGAAACAACTAGCTAATCTGCAGCATTCTGCACAGTCTCATGGAAACATGACGATGCAAGCTTGCACCCAAGGAGGCCAAGCTAGCTCTCAACTCATGCAGACACCTCAACCACAAGCTAGACCACAGATCCTAAACGAAAGCAATGCAGCTAGCGTTACAAGGCTTCCGCCGACAATACAGCAATCAATTTTACCAAATGGAACTGCTGGTGCGGTTTTGGCTAGGAATGAATTTGCCAATAACAGCAGAGGTGGAGGGTATAATCTAGTTTCACCAGCCTCAACAATGTTAAATTTTCCCATGAGCCAGACTGCAGAATTGCCTGGTAACAGTTTTCCTCTTCAAAGTACACCAGGAATATCAAGCACTGTACCAAAGGGAAGATTCCCAGACGAGGTTAACTCGGACATCAAAGGACCTGATGTTTTTATGCCAAGCTTTGATATGTTTAGGGATCTGCATCCTCAGAAGCCAGATTGGGACTTGCAACACGTAGGCATGACCTTCGATGCGTCTCAAGGTAGTCTCGACATTCCACCATCAGCATTTGCTCATCAAGGGTATCCCTCTAGCCAACAAAATGGACAAAACAGGAACACATATACAGCAGGCAAGGCCATGTTCTTGTTGGAAGAAGGAAATGACAATGGGAATGCACGAAGTATGGGTCAACAACTCAACCCTCTTTTCGTTGACGGTTCGGTGAGAGTTAAAGTGGAAAAAGCTTCTGAAACTAGCAGTCAAAATGACATTTTCTCTGATCACTTCGGTCAGGAGGACCTAATGAGTGCACTCCTTAAGCAGCAACAGGGAAGCATTGCGGTAGCTGAAAGTGAGTTGGAATGGGTATTTCATCATAATACTCCTGTTTAG 1734 44.98 MIFCLMDWLFLMSGRTCVVMSVDDGKNVVMKGVTHGACDYLIKPVRIEELKNIWQHVVRKRKNELKDLEQSGVEDADRQQKTNEEAEYSSSANEGSWRNSKRRKDDVEDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGMTQHQSNLNNTFMSAQDPFGPSLSGLDLQTLAAAGQLQPQSLATLQAAGFGRSTAKSGMPMPLVDQRNHIFSFENPKLRFGDGQQPHLNGSKPINLLHGIPTTMEPKQLANLQHSAQSHGNMTMQACTQGGQASSQLMQTPQPQARPQILNESNAASVTRLPPTIQQSILPNGTAGAVLARNEFANNSRGGGYNLVSPASTMLNFPMSQTAELPGNSFPLQSTPGISSTVPKGRFPDEVNSDIKGPDVFMPSFDMFRDLHPQKPDWDLQHVGMTFDASQGSLDIPPSAFAHQGYPSSQQNGQNRNTYTAGKAMFLLEEGNDNGNARSMGQQLNPLFVDGSVRVKVEKASETSSQNDIFSDHFGQEDLMSALLKQQQGSIAVAESELEWVFHHNTPV 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48668430 48672367 - Sed0000534.2 Sed02g1152 704820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1152 577 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 47 492 IPR044841 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed02g1152 577 MobiDBLite consensus disorder prediction 69 84 - -
Sed02g1152 577 Gene3D - 13 93 - -
Sed02g1152 577 SUPERFAMILY Homeodomain-like 118 178 IPR009057 -
Sed02g1152 577 Pfam Myb-like DNA-binding domain 123 173 IPR001005 -
Sed02g1152 577 SUPERFAMILY CheY-like 17 66 IPR011006 -
Sed02g1152 577 ProSiteProfiles Response regulatory domain profile. 1 58 IPR001789 GO:0000160(InterPro)
Sed02g1152 577 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 174 IPR006447 GO:0003677(InterPro)
Sed02g1152 577 MobiDBLite consensus disorder prediction 97 118 - -
Sed02g1152 577 FunFam Two-component response regulator 117 180 - -
Sed02g1152 577 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 120 177 IPR017930 -
Sed02g1152 577 MobiDBLite consensus disorder prediction 69 118 - -
Sed02g1152 577 Gene3D - 118 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1152 Sed-Chr2:48668430 Sed12g0794 Sed-Chr12:4870388 1.80E-279 dispersed
Sed02g1151 Sed-Chr2:48668430 Sed02g1152 Sed-Chr2:48668430 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37605 PF00249 Myb_DNA-binding 5.40E-08 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1152 K14491 - csv:101209013 1005.74