Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1179 ATGGCCACGGCTCTAAGACCCATCGATAATGCTCTGCCGGTAACTCCCGAACGGCCGAAGAAACAGTCGAAAGTGGCCGTTCCAGTCCAGAATCGAAACGACGAGAATCAGGCTCTGATTCTTCCTTCTACAGACGCCGCCATTGATTACGTTTCTTCCCAGAATCTGAAACCCTTGACCGATCCTGATTCTGATGATTTTATTGAAGGATTGGATTCCAAGGATTGGGTGAAGGTTTGTGAATCGCTCAATGGTGCTAGGCATCTTGCGCTGTTTCACTCTGATCTTTTGCTTCCCTCGTTAGAGAAAGTTATGGTGGTGCTGATGAAATCGATGAAAGACCCTAGAAGTGCCCTGATTAAGACCTCGATCATGGCTTCGTTTGACATTTTTAACTCGTTTGGCGATCGGTTGCTTGAATCCTCCACTGGCAATGCGCTTGATCAATTGCTGCTCCAATTACTACTCAAAGCTTCTCAAGACAAGAAGTTTGTATGTGAAGAAGCAGATAGGGCTCTGAAAGCTCTAGTGCAATCCATGACTCCTCTACCTCTGCTACACAAACTTCAACCATATGTTTCCCATTCAAACTTCAGAGTCAGAGCCAAAGTCGCCATTCCAATCTCTAATTGTGTCTCTAAAATGGGTCTGGATGAAATGAACCAATATGGGATTGTTCCATTGCTTCAAATGGCCGCAGATTTGTTAAACGGCAGGCTACCCGAGGCGAGGGAAGCCGCTCGGAGTATTGCGATGGGAGTGTTCAAAGCATTCACAGAAAAAGAGGAAGAGAAACAGGAGGCATGGCAAAGCTTTTGCCAAGCTAATCTGTCGCCGATTCATGCTCAGTCTTTGCTCAAAGTTACCTCTTCTCAATAG 879 45.96 MATALRPIDNALPVTPERPKKQSKVAVPVQNRNDENQALILPSTDAAIDYVSSQNLKPLTDPDSDDFIEGLDSKDWVKVCESLNGARHLALFHSDLLLPSLEKVMVVLMKSMKDPRSALIKTSIMASFDIFNSFGDRLLESSTGNALDQLLLQLLLKASQDKKFVCEEADRALKALVQSMTPLPLLHKLQPYVSHSNFRVRAKVAIPISNCVSKMGLDEMNQYGIVPLLQMAADLLNGRLPEAREAARSIAMGVFKAFTEKEEEKQEAWQSFCQANLSPIHAQSLLKVTSSQ 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48826397 48828734 + Sed0000385.1 Sed02g1179 704847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1179 292 MobiDBLite consensus disorder prediction 1 29 - -
Sed02g1179 292 Gene3D - 47 278 IPR011989 -
Sed02g1179 292 SMART TOG_3 49 283 IPR034085 -
Sed02g1179 292 SUPERFAMILY ARM repeat 61 274 IPR016024 -
Sed02g1179 292 PANTHER CLASP 67 260 - GO:0000226(PANTHER)|GO:0005881(PANTHER)|GO:0008017(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1179 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0569 Sed-Chr6:4980055 Sed02g1179 Sed-Chr2:48826397 3.10E-55 transposed
Sed12g0839 Sed-Chr12:5167451 Sed02g1179 Sed-Chr2:48826397 3.30E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g303 . . . . . . . . . . . Cma14g01618 Car06g01291 Car14g01441 Sed02g1179 Cpe08g00184 Cpe03g01359 Bhi01g01015 Tan10g1009 Cmetu06g2058 . Hepe05g1446 . Lcy11g1412 . . . . . . . Cone14ag0763 . . . Lsi05g01541 . . Cme06g00735 . Blo07g00172 Bda11g00524 . . Bpe13g00666 . Bma06g01500 . Cmo06g01497 Cmo14g01655 . . . . . . . . . . . . . Cla05g00654 Cam05g0714 Cec05g0726 Cco05g0723 Clacu05g0708 Cmu05g0675 Cre05g0748 . Csa03g01466 Chy06g00706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008188 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 2 2 1 1 35