Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1186 ATGCTTCAAGAAACTTCAACAAAACCTGAGGGTGAACTTGAAGTTAGCTTTGGTTATAAATGCAGTGATAACCTAGATGGAATTCATGAGGTTTCCAACAAATTCGAGATAGAGCCTGGACTTCGAAGGATCAGTAGTTTTTCTTGCTTATCTGGGGCTGCCTTGAGTGCGAATGCCACCCTAGCAAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATACTTCCGACCTGGGATTCTCCTAACTCCTTCCATAAGGTTCCCTCATCGCCTACTCTTTCAAGATTAGATATATTGTCATCATCTCTGCAGAGTAGTCTGTCAAACTTAAGCTGCAGTCCATCTACCCCAACATCTGAATATGATTCATACTTGTTAAAATCCATGAGTGCTCCTTCAGGAGGTGAAAGTTTTCTTAATGTAAAGGAAGTGCAAGTGGCAGGTGGAGCTGCCGGTGAGGATAGGGTCCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGCAATTTATGATGGTTTTAATGGAAGGGATGCAGCTGATTTTCTTGCTGGCACATTGTACGAATCCATCGTATTTTATTTTAACCTACTAGATTGGGAAGCTAAGCATGAAACCTCGGACAATTTGGACATGGATTCAGATCTTATTGATGATAGTAGCATTTCTCAGGGAAGATTTTCTCCTTTGAAAAAAAATATTAAATGTCTTTCAAATACCAGCAATATATTCGAGAACCATTCGCATGACAAAGTAGGAATGACAAACTATCCTCTAAGGCATGGGGTGCTTGATAGCCTACAGCGTGCTCTTAGTCAAACGGAGAATGATTTTCTGCACATGGTTGAACAAGAAATGGAAGATCGTCCTGATTTAGTTTCTGTTGGATCTTGTGTTTTAGTCGTTCTTCTTTATGGAAAGGATTTGTATACGCTGAATTTGGGTGATAGTAGAGCAGTACTAGCTACCATTGAGGAAGGTACAATGAGAGGGAATGAGGGACTGAAAGCTGTGCAACTCACTGAGATTCACACAGTGGATAATGAATTTGAAAGAGCACAGTTACAACATGATCATCCTGATGATCCTAGAATCGTTGTTGGTGGCAAAGTCAAAGGAAAACTGAAGGTTACTCGTGCTTTTGGAGTTGGCTACTTGAAGACGGTACGTGATTAA 1182 40.36 MLQETSTKPEGELEVSFGYKCSDNLDGIHEVSNKFEIEPGLRRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFHKVPSSPTLSRLDILSSSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGGESFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYESIVFYFNLLDWEAKHETSDNLDMDSDLIDDSSISQGRFSPLKKNIKCLSNTSNIFENHSHDKVGMTNYPLRHGVLDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLYGKDLYTLNLGDSRAVLATIEEGTMRGNEGLKAVQLTEIHTVDNEFERAQLQHDHPDDPRIVVGGKVKGKLKVTRAFGVGYLKTVRD 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48858314 48869166 + Sed0015229.2 Sed02g1186 704854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1186 393 SUPERFAMILY PP2C-like 153 389 IPR036457 -
Sed02g1186 393 CDD PP2Cc 152 389 IPR001932 -
Sed02g1186 393 ProSiteProfiles PPM-type phosphatase domain profile. 139 393 IPR001932 -
Sed02g1186 393 PANTHER PROTEIN PHOSPHATASE 2C 148 389 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Sed02g1186 393 SMART PP2C_4 130 393 IPR001932 -
Sed02g1186 393 Pfam Protein phosphatase 2C 269 390 IPR001932 -
Sed02g1186 393 Gene3D - 119 393 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1186 Sed-Chr2:48858314 Sed12g0833 Sed-Chr12:5144162 1.70E-180 dispersed
Sed02g1185 Sed-Chr2:48858314 Sed02g1186 Sed-Chr2:48858314 6.20E-223 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1186 - - - 0.0