Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1208 | ATGAACCCGTACGGTCAGTCTATGGACGGTTCTCAGTCCGATCCGTCGCCGGAATGGACCGGTTCCGGCCCCGACACAGTTCATGGAGAGGCGGATTGGCCGGTGGGATCGAGGGAGCGGGAATCGTACCCGGAACGGCCTGAAGAGGCCGATTGTATATACTATCTGCGTACTGGATTTTGTGGATATGGCTCTCGTTGTAGGTTTAATCATCCTCGTGAGCGTAGCGCGGTTTCGGGAGGTTCGAGACCTGGTGGAAGAGACTTTCCTGAACGATTAGGGCAGCCTGTGTGCCAGTACTTCATAAGGACAGGAATGTGCAAATTTGGGGTTTCCTGTAAGTATCACCATCCTCAGCAGGATAAAGATTCTCTCAGCCCCGTGTCGCTGAATTTCTACGGCTACCCACTACGGCTGGGTGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCCGAACCGGCTGGTTTGCAGTTTCCAGCCCCATCGCCTGTTCAGGTTACACCAGTGCCTCCAATGCCTCCTGTACCCTCTGTTTATCCCCCTGTGCAGTCTCCATCGGCTCTTTCGTCACAACAATATGGAGTAATTATAGCAAGGTCTCCAATGCTGTCGAGCCCATATGTTCAGAGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGTTTGTTCAATTCCCAAGTTGGAGTCCTTACCCGGCACCCATGAGTCCAGCAGCCTCTCCCAGTGCTCAACCGCCTGTTGGCTCCGGACAACTTTATGGCATGGCACAAGTTTCACCTTCTGCATCTGCCTATGCAGGATCTTATCAGCCCTTGCCATCCGCTGGTCCATCTAGTACTAGCCAGAGGGAGCACTCATTTCCAGAAAGGCCTGGCCAACCAGAGTGTCAATATTACATGAGAACAGGGGATTGCAAATTTGGATCTTCTTGTCGATACCATCACCCATCAGAATTGGTTACTCCGAGGTCAAGTGTTGTTTTTAGCCAACTAGCACTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCACGCAACGAGGCATCTGTAAGTTTGGCCCTGCATGCAAATTCGACCACTCGATGGAACGACTTAGTTACAGCCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCATACCCTGTGGGTTCGGTAGTTGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATCTTTCAGGATCCAGAAAGGACTCTAACCCTTCAAGAATGTCTTCATTAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCAATCTCATTCAAGTGTTCAACAGTCTTCTCAAAATTCTGGCCCGACAGCAAGCAGTACATCCAGTACTGCCAGTCCGGAGGATCGTACTTGA | 1443 | 50.66 | MNPYGQSMDGSQSDPSPEWTGSGPDTVHGEADWPVGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVSGGSRPGGRDFPERLGQPVCQYFIRTGMCKFGVSCKYHHPQQDKDSLSPVSLNFYGYPLRLGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPVPPMPPVPSVYPPVQSPSALSSQQYGVIIARSPMLSSPYVQSPYGPMLVSPGFVQFPSWSPYPAPMSPAASPSAQPPVGSGQLYGMAQVSPSASAYAGSYQPLPSAGPSSTSQREHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPSELVTPRSSVVFSQLALPLRPGAPPCTHFTQRGICKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEHLSGSRKDSNPSRMSSLMSTSSGLVGSTTSRTEMQSHSSVQQSSQNSGPTASSTSSTASPEDRT | 480 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 48985279 | 48989849 | + | Sed0013782.1 | Sed02g1208 | 704876 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1208 | 480 | SUPERFAMILY | CCCH zinc finger | 139 | 166 | IPR036855 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | SMART | c3hfinal6 | 302 | 329 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | SMART | c3hfinal6 | 138 | 165 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | SMART | c3hfinal6 | 348 | 375 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | SUPERFAMILY | CCCH zinc finger | 95 | 122 | IPR036855 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 330 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 348 | 376 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | PANTHER | PROTEIN PHOSPHATASE RELATED | 37 | 376 | IPR050974 | GO:0003729(PANTHER) | |
Sed02g1208 | 480 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Sed02g1208 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | SUPERFAMILY | CCCH zinc finger | 351 | 379 | IPR036855 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | MobiDBLite | consensus disorder prediction | 424 | 480 | - | - | |
Sed02g1208 | 480 | SUPERFAMILY | CCCH zinc finger | 48 | 74 | IPR036855 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | Gene3D | - | 300 | 387 | - | - | |
Sed02g1208 | 480 | Gene3D | - | 42 | 121 | - | - | |
Sed02g1208 | 480 | MobiDBLite | consensus disorder prediction | 281 | 299 | - | - | |
Sed02g1208 | 480 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Sed02g1208 | 480 | FunFam | CCCH type zinc finger protein | 300 | 385 | - | - | |
Sed02g1208 | 480 | MobiDBLite | consensus disorder prediction | 404 | 480 | - | - | |
Sed02g1208 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 141 | 165 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 350 | 375 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 94 | 119 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 303 | 328 | IPR000571 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | SUPERFAMILY | CCCH zinc finger | 306 | 330 | IPR036855 | GO:0046872(InterPro) | |
Sed02g1208 | 480 | Gene3D | - | 122 | 171 | - | - | |
Sed02g1208 | 480 | MobiDBLite | consensus disorder prediction | 281 | 306 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1208 | Sed-Chr2:48985279 | Sed12g0848 | Sed-Chr12:5223649 | 1.50E-117 | dispersed | |
Sed02g1208 | Sed-Chr2:48985279 | Sed02g1209 | Sed-Chr2:48985279 | 4.10E-144 | tandem | |
Sed04g3564 | Sed-Chr4:45029087 | Sed02g1208 | Sed-Chr2:48985279 | 8.90E-12 | transposed | |
Sed12g0847 | Sed-Chr12:5223649 | Sed02g1208 | Sed-Chr2:48985279 | 2.00E-159 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37618 | PF00642 | zf-CCCH | 1.20E-07 | CL0537 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1208 | - | - | - | 0.0 |