Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1208 ATGAACCCGTACGGTCAGTCTATGGACGGTTCTCAGTCCGATCCGTCGCCGGAATGGACCGGTTCCGGCCCCGACACAGTTCATGGAGAGGCGGATTGGCCGGTGGGATCGAGGGAGCGGGAATCGTACCCGGAACGGCCTGAAGAGGCCGATTGTATATACTATCTGCGTACTGGATTTTGTGGATATGGCTCTCGTTGTAGGTTTAATCATCCTCGTGAGCGTAGCGCGGTTTCGGGAGGTTCGAGACCTGGTGGAAGAGACTTTCCTGAACGATTAGGGCAGCCTGTGTGCCAGTACTTCATAAGGACAGGAATGTGCAAATTTGGGGTTTCCTGTAAGTATCACCATCCTCAGCAGGATAAAGATTCTCTCAGCCCCGTGTCGCTGAATTTCTACGGCTACCCACTACGGCTGGGTGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCCGAACCGGCTGGTTTGCAGTTTCCAGCCCCATCGCCTGTTCAGGTTACACCAGTGCCTCCAATGCCTCCTGTACCCTCTGTTTATCCCCCTGTGCAGTCTCCATCGGCTCTTTCGTCACAACAATATGGAGTAATTATAGCAAGGTCTCCAATGCTGTCGAGCCCATATGTTCAGAGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGTTTGTTCAATTCCCAAGTTGGAGTCCTTACCCGGCACCCATGAGTCCAGCAGCCTCTCCCAGTGCTCAACCGCCTGTTGGCTCCGGACAACTTTATGGCATGGCACAAGTTTCACCTTCTGCATCTGCCTATGCAGGATCTTATCAGCCCTTGCCATCCGCTGGTCCATCTAGTACTAGCCAGAGGGAGCACTCATTTCCAGAAAGGCCTGGCCAACCAGAGTGTCAATATTACATGAGAACAGGGGATTGCAAATTTGGATCTTCTTGTCGATACCATCACCCATCAGAATTGGTTACTCCGAGGTCAAGTGTTGTTTTTAGCCAACTAGCACTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCACGCAACGAGGCATCTGTAAGTTTGGCCCTGCATGCAAATTCGACCACTCGATGGAACGACTTAGTTACAGCCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCATACCCTGTGGGTTCGGTAGTTGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATCTTTCAGGATCCAGAAAGGACTCTAACCCTTCAAGAATGTCTTCATTAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCAATCTCATTCAAGTGTTCAACAGTCTTCTCAAAATTCTGGCCCGACAGCAAGCAGTACATCCAGTACTGCCAGTCCGGAGGATCGTACTTGA 1443 50.66 MNPYGQSMDGSQSDPSPEWTGSGPDTVHGEADWPVGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERSAVSGGSRPGGRDFPERLGQPVCQYFIRTGMCKFGVSCKYHHPQQDKDSLSPVSLNFYGYPLRLGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPVPPMPPVPSVYPPVQSPSALSSQQYGVIIARSPMLSSPYVQSPYGPMLVSPGFVQFPSWSPYPAPMSPAASPSAQPPVGSGQLYGMAQVSPSASAYAGSYQPLPSAGPSSTSQREHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPSELVTPRSSVVFSQLALPLRPGAPPCTHFTQRGICKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEHLSGSRKDSNPSRMSSLMSTSSGLVGSTTSRTEMQSHSSVQQSSQNSGPTASSTSSTASPEDRT 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48985279 48989849 + Sed0013782.1 Sed02g1208 704876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1208 480 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872(InterPro)
Sed02g1208 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 SUPERFAMILY CCCH zinc finger 95 122 IPR036855 GO:0046872(InterPro)
Sed02g1208 480 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 PANTHER PROTEIN PHOSPHATASE RELATED 37 376 IPR050974 GO:0003729(PANTHER)
Sed02g1208 480 MobiDBLite consensus disorder prediction 1 44 - -
Sed02g1208 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 SUPERFAMILY CCCH zinc finger 351 379 IPR036855 GO:0046872(InterPro)
Sed02g1208 480 MobiDBLite consensus disorder prediction 424 480 - -
Sed02g1208 480 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872(InterPro)
Sed02g1208 480 Gene3D - 300 387 - -
Sed02g1208 480 Gene3D - 42 121 - -
Sed02g1208 480 MobiDBLite consensus disorder prediction 281 299 - -
Sed02g1208 480 MobiDBLite consensus disorder prediction 1 20 - -
Sed02g1208 480 FunFam CCCH type zinc finger protein 300 385 - -
Sed02g1208 480 MobiDBLite consensus disorder prediction 404 480 - -
Sed02g1208 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 119 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 328 IPR000571 GO:0046872(InterPro)
Sed02g1208 480 SUPERFAMILY CCCH zinc finger 306 330 IPR036855 GO:0046872(InterPro)
Sed02g1208 480 Gene3D - 122 171 - -
Sed02g1208 480 MobiDBLite consensus disorder prediction 281 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1208 Sed-Chr2:48985279 Sed12g0848 Sed-Chr12:5223649 1.50E-117 dispersed
Sed02g1208 Sed-Chr2:48985279 Sed02g1209 Sed-Chr2:48985279 4.10E-144 tandem
Sed04g3564 Sed-Chr4:45029087 Sed02g1208 Sed-Chr2:48985279 8.90E-12 transposed
Sed12g0847 Sed-Chr12:5223649 Sed02g1208 Sed-Chr2:48985279 2.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37618 PF00642 zf-CCCH 1.20E-07 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1208 - - - 0.0