Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1209 ATGTGCAAATTTGGGGTTTCCTGTAAGTATCACCATCCTCAGCAGGATAAAGATTCTCTCAGCCCCGTGTCGCTGAATTTCTACGGCTACCCACTACGGCTGGGTGAAAAGGAGTGCTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCCGAACCGGCTGGTTTGCAGTTTCCAGCCCCATCGCCTGTTCAGGTTACACCAGTGCCTCCAATGCCTCCTGTACCCTCTGTTTATCCCCCTGTGCAGTCTCCATCGGCTCTTTCGTCACAACAATATGGAGTAATTATAGCAAGGTCTCCAATGCTGTCGAGCCCATATGTTCAGAGCCCTTATGGTCCTATGTTGGTTTCCCCAGGGTTTGTTCAATTCCCAAGTTGGAGTCCTTACCCGGCACCCATGAGTCCAGCAGCCTCTCCCAGTGCTCAACCGCCTGTTGGCTCCGGACAACTTTATGGCATGGCACAAGTTTCACCTTCTGCATCTGCCTATGCAGGATCTTATCAGCCCTTGCCATCCGCTGGTCCATCTAGTACTAGCCAGAGGGAGCACTCATTTCCAGAAAGGCCTGGCCAACCAGAGTGTCAATATTACATGAGAACAGGGGATTGCAAATTTGGATCTTCTTGTCGATACCATCACCCATCAGAATTGGTTACTCCGAGGTCAAGTGTTGTTTTTAGCCAACTAGCACTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCACGCAACGAGGCATCTGTAAGTTTGGCCCTGCATGCAAATTCGACCACTCGATGGAACGACTTAGTTACAGCCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCATACCCTGTGGGTTCGGTAGTTGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATCTTTCAGGATCCAGAAAGGACTCTAACCCTTCAAGAATGTCTTCATTAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCAAGGACAGAAATGCAATCTCATTCAAGTGTTCAACAGTCTTCTCAAAATTCTGGCCCGACAGCAAGCAGTACATCCAGTACTGCCAGTCCGGAGGATCGTACTTGA 1128 49.29 MCKFGVSCKYHHPQQDKDSLSPVSLNFYGYPLRLGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPVPPMPPVPSVYPPVQSPSALSSQQYGVIIARSPMLSSPYVQSPYGPMLVSPGFVQFPSWSPYPAPMSPAASPSAQPPVGSGQLYGMAQVSPSASAYAGSYQPLPSAGPSSTSQREHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPSELVTPRSSVVFSQLALPLRPGAPPCTHFTQRGICKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVVGTLAPSSSSSELRPEHLSGSRKDSNPSRMSSLMSTSSGLVGSTTSRTEMQSHSSVQQSSQNSGPTASSTSSTASPEDRT 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48985279 48989849 + Sed0013782.2 Sed02g1209 704877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1209 375 SUPERFAMILY CCCH zinc finger 201 225 IPR036855 GO:0046872(InterPro)
Sed02g1209 375 Gene3D - 1 66 - -
Sed02g1209 375 Gene3D - 192 282 - -
Sed02g1209 375 MobiDBLite consensus disorder prediction 176 194 - -
Sed02g1209 375 SUPERFAMILY CCCH zinc finger 246 274 IPR036855 GO:0046872(InterPro)
Sed02g1209 375 MobiDBLite consensus disorder prediction 176 201 - -
Sed02g1209 375 SMART c3hfinal6 243 270 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 SMART c3hfinal6 197 224 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 SMART c3hfinal6 33 60 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 SUPERFAMILY CCCH zinc finger 34 61 IPR036855 GO:0046872(InterPro)
Sed02g1209 375 ProSiteProfiles Zinc finger C3H1-type profile. 1 15 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 PANTHER PROTEIN PHOSPHATASE RELATED 1 271 IPR050974 GO:0003729(PANTHER)
Sed02g1209 375 ProSiteProfiles Zinc finger C3H1-type profile. 243 271 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 Pfam RNA-binding, Nab2-type zinc finger 2 13 - -
Sed02g1209 375 ProSiteProfiles Zinc finger C3H1-type profile. 197 225 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 MobiDBLite consensus disorder prediction 299 375 - -
Sed02g1209 375 FunFam CCCH type zinc finger protein 195 280 - -
Sed02g1209 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 270 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 198 223 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 60 IPR000571 GO:0046872(InterPro)
Sed02g1209 375 MobiDBLite consensus disorder prediction 319 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1209 Sed-Chr2:48985279 Sed12g0847 Sed-Chr12:5223649 3.70E-116 dispersed
Sed02g1208 Sed-Chr2:48985279 Sed02g1209 Sed-Chr2:48985279 4.10E-144 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37619 PF00642 zf-CCCH 8.80E-08 CL0537 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1209 - - - 0.0