Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1212 ATGGCGGCCATTTCCATTTGCTTCGCTCCACAAGCTCTTGCACGGCCCAGATTTCGAAACCCTAGAAAACTACAGTCCCCAAAGAAGCAGCTTCGCGGCAACACCGTCAAGATTCAAACCAATTCCAAGGAGTTATCTCCTTCCATCGGCGTCGAAGCCACCACCTACACCCGCCTCCCTCCCAGGGAAGATTTCGCTCTTCTTTCCTTTGATTCTCTGTCTTTTGATTCCAAGGATTCGTCTGAGGTGAAGCTTTTGGATTCCGACGTTGCGATTATTGAGGAGAATGATGATTCGGATTCTTTGAATAACGAATTGGATGGTAATTTGGGGATGGAGAAGTTTGAAGTGTTTGAGGGGGAATATGACTCTGAAATGGAGGAATATGAAGAAGATGAAGGTGAAGATGAAGATGAAGATGAAGAAGAAGAAGATGGAGAAAGTGTTTTGGCATCTAGGAAGGGGAAATTTGTTAATACTGATGGAGTGGGAGCCTATTATCATGAAGTTTACGACGCCGGCGAAGAAGATGGGAAGGAGAAGGGGCTGCCGGCGGTAATGCGGTGCTTTGATCGAGCGAAGATCTTTGTGAAAGCTGGTGATGGTGGCAATGGCGTTGTCGCGTTTCGGCGCGAGAAGTATGTACCGATGGGTGGCCCTTCCGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAGGTTGATGAGTCCATGAATTCGCTATTGCCGTTTCGAAACGGCATACATTTTCGTGCTGGAAGAGGTAGTCATGGGCAGGGGAAAATGCAAAGCGGGGCGAAGGGTGAAGATGTGGTAGTGAAAGTGGCGCCTGGAACAGTGATCAAAGATGCATTTAGTCAGGAGGTTGTTTTGGAACTGTTGCATCCGGGCCAGCGTGCTCTGTTGCTCCGCGGTGGAAGAGGTGGACGAGGGAATGCATCTTTCAAATCCGGGACGAATAAGGTTCCAAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGCTGGAACTAAAGCTTGTTGCAGACGTTGGAATCGTGGGAGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATTAGTGCTGCACAGCCAGCCATAGCAAATTACCCTTTTACCACTCTACTCCCAAACTTGGGTGTTGTTTCGTTCGACTATGATTCAACTATGGTGGTGGCAGATCTTCCGGGATTACTTGAAGGGGCACACGAGGGCTTTGGTTTAGGCCATGAATTTCTACGTCACACTGAAAGGTGTTCCGCACTGGTGCATGTGGTCGATGGATCAGGACCACAACCTGAATATGAATTTGATGCCGTTCGTTTGGAGTTGGAGCTCTTTAGCCCTGAACTAGCTGAAAAGCCCTATCTTGTTGCCTATAATAAAATGGATCTTCCTGAAGCGTATGAAAACTGGTCAGCATTCAAGAAAAAGCTCCAAGCTCGTGGGATTGAACCTTTTTGCATGAGTGCCGTAAAAAGAGAGGCCACTCATGAAGTCATTAGTGCTGCATATCAGCTGCTAAGGGAAAATAAGGAAACCAACAGGGAATTTCAAGGTGGGAAAATACCAGAGAATCTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTTTGAAATTATTCATGATAGCGGTTCCTGGCATGTTGTAGGATCTGGTTTACAACGTTTTGTTCAGATGACAAATTGGCGTTACATGGAGTCTGAAAGAAGGTTCCAACATGTCATGGAGGCATGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCGTCAAGGAGGGCGACACTGTGTTTATTGCAGAGATGGAGATGATCTGGCATGATTCACCCAATAGTTCTGGTCCATCAAATATGAGGCAAAAATCAGATTCTGTCAAATGGCCTGAGTGGAAGTAG 1929 46.76 MAAISICFAPQALARPRFRNPRKLQSPKKQLRGNTVKIQTNSKELSPSIGVEATTYTRLPPREDFALLSFDSLSFDSKDSSEVKLLDSDVAIIEENDDSDSLNNELDGNLGMEKFEVFEGEYDSEMEEYEEDEGEDEDEDEEEEDGESVLASRKGKFVNTDGVGAYYHEVYDAGEEDGKEKGLPAVMRCFDRAKIFVKAGDGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNGIHFRAGRGSHGQGKMQSGAKGEDVVVKVAPGTVIKDAFSQEVVLELLHPGQRALLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWSAFKKKLQARGIEPFCMSAVKREATHEVISAAYQLLRENKETNREFQGGKIPENLDHVADRIHKQRSASIDDFEIIHDSGSWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGVKEGDTVFIAEMEMIWHDSPNSSGPSNMRQKSDSVKWPEWK 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49004532 49011797 - Sed0007220.2 Sed02g1212 704880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1212 642 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 346 514 IPR031167 GO:0005525(InterPro)
Sed02g1212 642 MobiDBLite consensus disorder prediction 123 146 - -
Sed02g1212 642 ProSiteProfiles Obg domain profile. 187 345 IPR006169 -
Sed02g1212 642 MobiDBLite consensus disorder prediction 18 49 - -
Sed02g1212 642 SUPERFAMILY Obg GTP-binding protein N-terminal domain 190 344 IPR036726 -
Sed02g1212 642 FunFam GTPase Obg 345 524 - -
Sed02g1212 642 SUPERFAMILY Obg GTP-binding protein C-terminal domain 549 619 IPR036346 -
Sed02g1212 642 CDD Obg 346 513 IPR031167 GO:0005525(InterPro)
Sed02g1212 642 ProSitePatterns GTP1/OBG family signature. 399 412 IPR006074 GO:0005525(InterPro)
Sed02g1212 642 ProSiteProfiles Obg C-terminal (OCT) domain profile. 542 619 IPR015349 GO:0000166(InterPro)
Sed02g1212 642 Hamap GTPase Obg [obg]. 188 514 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Sed02g1212 642 Gene3D - 345 524 IPR027417 -
Sed02g1212 642 Pfam Domain of unknown function (DUF1967) 550 617 IPR015349 GO:0000166(InterPro)
Sed02g1212 642 NCBIfam Obg family GTPase CgtA 190 513 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Sed02g1212 642 FunFam GTPase Obg 187 344 - -
Sed02g1212 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 518 IPR027417 -
Sed02g1212 642 Pfam 50S ribosome-binding GTPase 347 467 IPR006073 GO:0005525(InterPro)
Sed02g1212 642 MobiDBLite consensus disorder prediction 123 153 - -
Sed02g1212 642 MobiDBLite consensus disorder prediction 27 49 - -
Sed02g1212 642 MobiDBLite consensus disorder prediction 620 642 - -
Sed02g1212 642 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 176 522 IPR045086 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005739(PANTHER)
Sed02g1212 642 NCBIfam Obg family GTPase CgtA C-terminal domain 550 617 IPR015349 GO:0000166(InterPro)
Sed02g1212 642 Gene3D - 552 620 IPR036346 -
Sed02g1212 642 MobiDBLite consensus disorder prediction 620 634 - -
Sed02g1212 642 Gene3D GTP1/OBG domain 185 344 IPR036726 -
Sed02g1212 642 PRINTS GTP1/OBG GTP-binding protein family signature 414 432 IPR006073 GO:0005525(InterPro)
Sed02g1212 642 PRINTS GTP1/OBG GTP-binding protein family signature 369 387 IPR006073 GO:0005525(InterPro)
Sed02g1212 642 PRINTS GTP1/OBG GTP-binding protein family signature 348 368 IPR006073 GO:0005525(InterPro)
Sed02g1212 642 PRINTS GTP1/OBG GTP-binding protein family signature 397 412 IPR006073 GO:0005525(InterPro)
Sed02g1212 642 Pfam GTP1/OBG 191 344 IPR006169 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1212 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1212 Sed-Chr2:49004532 Sed13g1606 Sed-Chr13:21254836 1.40E-51 dispersed
Sed02g1211 Sed-Chr2:49004532 Sed02g1212 Sed-Chr2:49004532 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33