Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1214 ATGGGTGGGTGTTTTCCTTGCTTTGGATCCTCCAAAGAAGACGGCAATGGCGTAAAGGAAGCTTCTAAGAAGGATTCAGCTAAGGATGGCTCCACCGCTCAGTCTCACCGTGTTAACAGAGTGAGCTCAGATAAATCGAAATCATGGAGTGTATCTGATGCCAAGAAGGAACCAACCATTCAAAAGGATGGAACAACAGCGCATATTGCAGCCCAAACATTTACATTTCGGGAACTCGCTACAGCTACAAAGAACTTCAGACCAGAATGCCTAATAGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCTTGGAGAGCACAGGACAGGCAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTCTGGTGGAGGTTCTAATGCTTAGCCTGTTACATCACTCAAATCTTGTTAACTTGATAGGCTATTGTGCTGATGGGGATCAACGTCTTCTTGTTTATGAATTCATGCCATTGGGGTCACTGGAAGATCATTTGCATGATCTTCCACCAGATAAAGAGCCATTGGATTGGAATATTAGAATGAAGATAGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCAAACCCCCCTGTTATATATCGAGACTTGAAGTCGTCTAATATTCTTCTCGACGAGGGCTACCATCCCAAGCTGTCAGATTTTGGTCTTGCCAAACTGGGTCCAGTTGGCGATAAGACTCATGTGTCGACGAGAGTGATGGGAACTTATGGTTATTGTGCTCCAGAGTATGCTATGACTGGTCAGCTCACTCTCAAGTCGGATGTATATAGTTTTGGAGTTGTCTTTCTAGAACTTATCACAGGCCGCAAGGCAATCGATAATACCAGAGGTCCGGGAGAGCATAATCTTGTAGCATGGGCTCGGCCACTTTTTAAAGATCGCTGGAAATTCCCTAAGATGGCTGATCCGCTGCTGCAAGGCCGTTATCCCATGCGAGGACTATATCAGGCATTGGCAGTTGCAGCAATGTGCTTGCAGGAGCAGGCTGCTACTAGACCTCTTATCGGGGACGTTGTTACCGCCTTGACGTATCTAGCTTCACAAGCTTATGATCCTAATACAGCTGCTTCTCAAAGCAATCGTTTGAGTGGATTGACTCCACGAGCTCGAGATGAGCGGAGAGTTTTGCCAGATGGGTGGGATAGCCCTGATGAACGTGGTCGTGGACGTGGTTCCCCATCAAGCTATAGAAACTCACCTGATTACAGAAAAAAAGACCTCCGTAGGGAATTGAGTTGCGGAGGTACAGAGCTAAGCAAAATTGACACGGGAGGTGGGTCTGGTCGAAATTTGGGTTTGGATGAGTTAGAACAACAAGACTCTCTGCGAGACAGTCCTATATATACTGGGAGAGCAAGGGATACAGCAAGGAACCGTGACCTAAACAGAGAACGAGCAGTTGCAGAAGCAAAAGTGTGGGGTGAAAACTACAGAGAGAGAAAGCGCACAAATGCGCAAGGCAGCTTCGACGGTTCACAAGAATGA 1539 46.78 MGGCFPCFGSSKEDGNGVKEASKKDSAKDGSTAQSHRVNRVSSDKSKSWSVSDAKKEPTIQKDGTTAHIAAQTFTFRELATATKNFRPECLIGEGGFGRVYKGRLESTGQAVAVKQLDRNGLQGNREFLVEVLMLSLLHHSNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNIRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRWKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQAYDPNTAASQSNRLSGLTPRARDERRVLPDGWDSPDERGRGRGSPSSYRNSPDYRKKDLRRELSCGGTELSKIDTGGGSGRNLGLDELEQQDSLRDSPIYTGRARDTARNRDLNRERAVAEAKVWGENYRERKRTNAQGSFDGSQE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49030698 49037000 + Sed0009682.1 Sed02g1214 704882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1214 512 MobiDBLite consensus disorder prediction 417 433 - -
Sed02g1214 512 FunFam Serine/threonine-protein kinase PBS1 59 162 - -
Sed02g1214 512 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Sed02g1214 512 MobiDBLite consensus disorder prediction 1 64 - -
Sed02g1214 512 MobiDBLite consensus disorder prediction 32 48 - -
Sed02g1214 512 SMART serkin_6 86 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1214 512 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1214 512 MobiDBLite consensus disorder prediction 373 512 - -
Sed02g1214 512 Gene3D Phosphorylase Kinase; domain 1 57 162 - -
Sed02g1214 512 MobiDBLite consensus disorder prediction 384 409 - -
Sed02g1214 512 MobiDBLite consensus disorder prediction 471 503 - -
Sed02g1214 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1214 512 MobiDBLite consensus disorder prediction 16 31 - -
Sed02g1214 512 PANTHER OS07G0668900 PROTEIN 37 378 - -
Sed02g1214 512 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Sed02g1214 512 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524(InterPro)
Sed02g1214 512 SUPERFAMILY Protein kinase-like (PK-like) 72 371 IPR011009 -
Sed02g1214 512 Pfam Protein kinase domain 91 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1214 512 CDD STKc_IRAK 92 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1214 Sed-Chr2:49030698 Sed07g0119 Sed-Chr7:1090298 4.90E-172 dispersed
Sed12g0854 Sed-Chr12:5311168 Sed02g1214 Sed-Chr2:49030698 4.60E-271 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78814 PF00069 Pkinase 4.60E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1214 - - - 0.0