Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1217 ATGGAAGTCTCCGCTAATGATCGTCTTGATTTTGGGAAGATGGGTTATGGATGCCGGCATTATCGTAGGAGGTGTAGGATTCGAGCTCCTTGTTGCAATGAAATCTACCCTTGTCGCCATTGTCATAACGAAGCTACGAGTGTGATGATCAGACCCTTTGATCGTCATGAACTAGACCGTTTCGATGTTAAACAAGTCGTCTGTGCTGTTTGTGACACGGAGCAGCCAGTTGCTCGACTTTGTACGAACTGTGGTGTTAATATGGGGGAGTACTTCTGTGAAATATGCAAATTCTATGATGATGATATTGAGAAAGGGCAGTTCCATTGTGAGGAATGTGGGATTTGTAGGGTTGGCGGTCGAGAAAACTACTTTCATTGCAAGAAATGCGGATCATGTTACTCTGTTAATTTGCGTGACAATCATTCGTGTATCGAAAACTCTATGCAGCACCACTGTCCAATATGTTATGAGTACCTTTTCGACTCGCTGAAAGATGTTGCTGTTATGAAATGTGGGCATACAATGCATCACGAATGCTACTATGAGATGATAAAACGTGATAAATACTGTTGTCCGATCTGCTCAAAGTCGATTGTCGACATGTCTTCTAAAGTGTGGAAACAATTAGACGATGAGATTGAAGCAACAGTCATGCCTGAGGAATATCGTCACAAAAAGGTATGGATTTTATGCAACGACTGCAACGACACGACCGAAGTGTACTTTCACATAATCGGGCAGAAATGCAGCCACTGTCAATCGTACAACACGCGCGCCATTGCGCCTCCAGTTCTCCCACAGTGA 807 43.62 MEVSANDRLDFGKMGYGCRHYRRRCRIRAPCCNEIYPCRHCHNEATSVMIRPFDRHELDRFDVKQVVCAVCDTEQPVARLCTNCGVNMGEYFCEICKFYDDDIEKGQFHCEECGICRVGGRENYFHCKKCGSCYSVNLRDNHSCIENSMQHHCPICYEYLFDSLKDVAVMKCGHTMHHECYYEMIKRDKYCCPICSKSIVDMSSKVWKQLDDEIEATVMPEEYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCQSYNTRAIAPPVLPQ 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49052911 49055831 + Sed0020744.1 Sed02g1217 704885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1217 268 SUPERFAMILY RING/U-box 151 202 - -
Sed02g1217 268 Pfam Ring finger domain 152 195 IPR001841 -
Sed02g1217 268 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Sed02g1217 268 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270(InterPro)
Sed02g1217 268 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270(InterPro)
Sed02g1217 268 Pfam CHY zinc finger 18 91 IPR008913 GO:0008270(InterPro)
Sed02g1217 268 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Sed02g1217 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 228 IPR013083 -
Sed02g1217 268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 7 260 - -
Sed02g1217 268 Gene3D - 229 263 - -
Sed02g1217 268 FunFam RING finger and CHY zinc finger domain-containing protein 1 225 267 - -
Sed02g1217 268 Pfam Zinc-ribbon 201 259 IPR039512 -
Sed02g1217 268 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Sed02g1217 268 SMART ring_2 153 195 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1217 K10144 - - csv:101219616 532.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1217 Sed-Chr2:49052911 Sed14g0367 Sed-Chr14:3844489 6.90E-77 dispersed
Sed09g1202 Sed-Chr9:36262383 Sed02g1217 Sed-Chr2:49052911 1.60E-84 transposed
Sed12g0856 Sed-Chr12:5324127 Sed02g1217 Sed-Chr2:49052911 1.60E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g352 . . . . . Bpe14g01145 . . . . Cma06g01471 Cma14g01639 Car06g01268 Car14g01465 Sed02g1217 Cpe08g00210 Cpe03g01381 Bhi01g00960 Tan10g0963 Cmetu01g0074 . . . Lcy11g1444 . . . . . . . . Cone15ag0784 . Cone4ag0170 Lsi05g01510 . . Cme06g00698 Blo02g00584 . . Bda13g00166 . . . . . Cmo06g01470 Cmo14g01678 . . . . . . . . . . . . . Cla05g00622 Cam05g0683 Cec05g0692 Cco05g0688 Clacu05g0677 Cmu05g0645 Cre05g0716 . Csa03g01422 Chy06g00663 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001789 2 2 0 2 2 2 4 2 1 2 2 2 4 2 2 4 2 4 4 1 2 2 1 2 2 1 2 3 5 2 68