Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1222 ATGGGGTGTGTTTTTGGGCGAGAGGTTTCTGGGAAGCCCGTCCAGAGAGCGGAGGAGGAAATTAGGGCTTCTGCGGCGGCGGAGGAGGAGGAGGTTGTGGAGGTTCGAGTTAATGTTGATGCTAATGTTTGCAATGGCGGTGGAAGTAGGAAGGAGGTTGAAGATGATCGAGGTTCGAGGCCGCGGCGGCGAAGGCCGAATCCGAGGTTGAGTAATCCGCCGAAGCATGTGCATGGCGAGCAAGTCGCCGCTGGCTGGCCGTCTTGGCTCTCCGCCGTCGCCGGTGAGGCTATTAATGGATGGATTCCTCGCCGTGCTGATAGTTTTGAGAAGCTTGATAAAATTGGTCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGATACCTTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTCGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCTCGTGAGATTCTCATACTGCGGCGTTTGGATCATCCAAATGTAGTTAAACTTGAAGGCTTGGTGACGTCCCGGATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCACATTTATGGAACCACAGGTTAAGTGTTACATGAACCAACTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGCGATATAAAGGGATCGAATCTTCTGATTGATAATGATGGGATCCTAAAGATAGCTGATTTTGGATTGGCTTCTGTATTTGATCCTAACCATAAGCATCCAATGACAAGTAGGGTGGTTACTCTTTGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGCTGGTGTAGACCTTTGGAGTGCTGGTTGCATTTTAGCTGAGCTATTAGCTGGAAAACCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAAGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACATTTAAAGACTTCCCGCCGTCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGATCCGGCTGAACGCCTAACCGCCACGGATGCGTTACATAGCGAATTTTTCACTACCAAGCCATATGCCTGTGAGCCTTCCAGCCTTCCCAAGTATCCACCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGAAGAAACAACGCAGATGGAGTGAAGAAAACACGGGCACGTGATCGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGATTCAAGCCAATCTAGATAGGCGGCGTCTCATAACACATGCAAATGCAAAAAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAAGACGGAGCACTTGGCTACCCTCTGGGATCTTCGCATCACGTCGATCCAATCTACGATCCTCCCGACGTTCCATTCAGCACTATGAATTTTTCATATCCAAAGGCAAGCATCCAAACATGGTCCGGTCCCTTGATGGACCCAGCTGCTGTAGGTGCTCCAAGAAGGAAAAAACACACAACAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAAAATCCTGCTCGTATCTAG 1692 48.23 MGCVFGREVSGKPVQRAEEEIRASAAAEEEEVVEVRVNVDANVCNGGGSRKEVEDDRGSRPRRRRPNPRLSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGITFMEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGAGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSKLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATDALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRNNADGVKKTRARDRAVRAIPAPEANAEIQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPAAVGAPRRKKHTTGHSSKSSKDLHKNPARI 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49097689 49102230 + Sed0003428.1 Sed02g1222 704890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1222 563 MobiDBLite consensus disorder prediction 44 81 - -
Sed02g1222 563 CDD STKc_CDK9_like 109 393 - -
Sed02g1222 563 SMART serkin_6 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1222 563 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1222 563 PANTHER CELL DIVISION PROTEIN KINASE 108 393 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed02g1222 563 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1222 563 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Sed02g1222 563 MobiDBLite consensus disorder prediction 525 563 - -
Sed02g1222 563 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Sed02g1222 563 MobiDBLite consensus disorder prediction 474 494 - -
Sed02g1222 563 MobiDBLite consensus disorder prediction 549 563 - -
Sed02g1222 563 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Sed02g1222 563 SUPERFAMILY Protein kinase-like (PK-like) 102 398 IPR011009 -
Sed02g1222 563 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Sed02g1222 563 Gene3D Transferase(Phosphotransferase) domain 1 192 432 - -
Sed02g1222 563 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1222 Sed-Chr2:49097689 Sed12g0864 Sed-Chr12:5354875 1.80E-252 dispersed
Sed02g1222 Sed-Chr2:49097689 Sed02g1223 Sed-Chr2:49098814 5.80E-267 tandem
Sed04g3535 Sed-Chr4:44766268 Sed02g1222 Sed-Chr2:49097689 2.20E-234 transposed
Sed14g0766 Sed-Chr14:8140317 Sed02g1222 Sed-Chr2:49097689 2.10E-115 transposed
Sed12g0863 Sed-Chr12:5354875 Sed02g1222 Sed-Chr2:49097689 6.60E-295 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78815 PF00069 Pkinase 5.60E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1222 K08819 - csv:101217952 972.23