Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1223 ATGGCCAATAAGAGCACAGCTCCAGTGGTATCATGTATACCCAATAGGTTACGGGTTCCATTCCCAGAATTGTTATTGAATTCAAAAAAGAAAATTATGATTGGTCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGATACCTTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTCGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCTCGTGAGATTCTCATACTGCGGCGTTTGGATCATCCAAATGTAGTTAAACTTGAAGGCTTGGTGACGTCCCGGATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCACATTTATGGAACCACAGGTTAAGTGTTACATGAACCAACTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGCGATATAAAGGGATCGAATCTTCTGATTGATAATGATGGGATCCTAAAGATAGCTGATTTTGGATTGGCTTCTGTATTTGATCCTAACCATAAGCATCCAATGACAAGTAGGGTGGTTACTCTTTGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGCTGGTGTAGACCTTTGGAGTGCTGGTTGCATTTTAGCTGAGCTATTAGCTGGAAAACCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAAGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACATTTAAAGACTTCCCGCCGTCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGATCCGGCTGAACGCCTAACCGCCACGGATGCGTTACATAGCGAATTTTTCACTACCAAGCCATATGCCTGTGAGCCTTCCAGCCTTCCCAAGTATCCACCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGAAGAAACAACGCAGATGGAGTGAAGAAAACACGGGCACGTGATCGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGATTCAAGCCAATCTAGATAGGCGGCGTCTCATAACACATGCAAATGCAAAAAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAAGACGGAGCACTTGGCTACCCTCTGGGATCTTCGCATCACGTCGATCCAATCTACGATCCTCCCGACGTTCCATTCAGCACTATGAATTTTTCATATCCAAAGGCAAGCATCCAAACATGGTCCGGTCCCTTGATGGACCCAGCTGCTGTAGGTGCTCCAAGAAGGAAAAAACACACAACAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAAAATCCTGCTCGTATCTAG 1449 45.48 MANKSTAPVVSCIPNRLRVPFPELLLNSKKKIMIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGITFMEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGAGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSKLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATDALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRNNADGVKKTRARDRAVRAIPAPEANAEIQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPAAVGAPRRKKHTTGHSSKSSKDLHKNPARI 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49098814 49102230 + Sed0003428.2 Sed02g1223 704891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1223 482 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524(InterPro)
Sed02g1223 482 Pfam Protein kinase domain 32 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1223 482 CDD STKc_CDK9_like 34 312 - -
Sed02g1223 482 MobiDBLite consensus disorder prediction 393 413 - -
Sed02g1223 482 Gene3D Phosphorylase Kinase; domain 1 28 115 - -
Sed02g1223 482 MobiDBLite consensus disorder prediction 444 482 - -
Sed02g1223 482 MobiDBLite consensus disorder prediction 468 482 - -
Sed02g1223 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1223 482 SMART serkin_6 28 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1223 482 ProSiteProfiles Protein kinase domain profile. 28 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1223 482 Gene3D Transferase(Phosphotransferase) domain 1 116 351 - -
Sed02g1223 482 FunFam probable serine/threonine-protein kinase At1g54610 111 352 - -
Sed02g1223 482 SUPERFAMILY Protein kinase-like (PK-like) 33 317 IPR011009 -
Sed02g1223 482 PANTHER CELL DIVISION PROTEIN KINASE 32 312 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed02g1223 482 FunFam probable serine/threonine-protein kinase At1g54610 21 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1223 Sed-Chr2:49098814 Sed12g0863 Sed-Chr12:5354875 1.70E-251 dispersed
Sed02g1222 Sed-Chr2:49097689 Sed02g1223 Sed-Chr2:49098814 5.80E-267 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78816 PF00069 Pkinase 5.70E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1223 K08819 - csv:101217952 835.099