Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1223 | ATGGCCAATAAGAGCACAGCTCCAGTGGTATCATGTATACCCAATAGGTTACGGGTTCCATTCCCAGAATTGTTATTGAATTCAAAAAAGAAAATTATGATTGGTCAAGGGACGTATAGTAATGTGTACAAAGCAAGGGATACCTTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTCGACAATTTGGAGCCCGAGAGTGTGAAATTTATGGCTCGTGAGATTCTCATACTGCGGCGTTTGGATCATCCAAATGTAGTTAAACTTGAAGGCTTGGTGACGTCCCGGATGTCGTGTAGTTTATATCTTGTATTTGAATACATGGTGCATGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCACATTTATGGAACCACAGGTTAAGTGTTACATGAACCAACTGTTATCAGGGCTTGAACACTGTCACAACCGTCACGTGCTGCATCGCGATATAAAGGGATCGAATCTTCTGATTGATAATGATGGGATCCTAAAGATAGCTGATTTTGGATTGGCTTCTGTATTTGATCCTAACCATAAGCATCCAATGACAAGTAGGGTGGTTACTCTTTGGTATCGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGCGCTGGTGTAGACCTTTGGAGTGCTGGTTGCATTTTAGCTGAGCTATTAGCTGGAAAACCTATCATGCCCGGTCGCACGGAGGTCGAGCAGCTACATAAGATATTCAAGTTATGTGGCTCTCCTACAGAAGATTACTGGAAAAAGTCGAAGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATATCAGAGACATTTAAAGACTTCCCGCCGTCATCTCTGCCATTAATCGAGACACTTCTTGCAATCGATCCGGCTGAACGCCTAACCGCCACGGATGCGTTACATAGCGAATTTTTCACTACCAAGCCATATGCCTGTGAGCCTTCCAGCCTTCCCAAGTATCCACCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGAAGAAACAACGCAGATGGAGTGAAGAAAACACGGGCACGTGATCGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGATTCAAGCCAATCTAGATAGGCGGCGTCTCATAACACATGCAAATGCAAAAAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAAGACGGAGCACTTGGCTACCCTCTGGGATCTTCGCATCACGTCGATCCAATCTACGATCCTCCCGACGTTCCATTCAGCACTATGAATTTTTCATATCCAAAGGCAAGCATCCAAACATGGTCCGGTCCCTTGATGGACCCAGCTGCTGTAGGTGCTCCAAGAAGGAAAAAACACACAACAGGTCATTCATCAAAATCATCCAAGGACTTGCATAAAAATCCTGCTCGTATCTAG | 1449 | 45.48 | MANKSTAPVVSCIPNRLRVPFPELLLNSKKKIMIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMVHDLAGLAASPGITFMEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASVFDPNHKHPMTSRVVTLWYRPPELLLGATDYGAGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTEDYWKKSKLPHATIFKPQHSYKRCISETFKDFPPSSLPLIETLLAIDPAERLTATDALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRNNADGVKKTRARDRAVRAIPAPEANAEIQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKASIQTWSGPLMDPAAVGAPRRKKHTTGHSSKSSKDLHKNPARI | 482 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 49098814 | 49102230 | + | Sed0003428.2 | Sed02g1223 | 704891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1223 | 482 | ProSitePatterns | Protein kinases ATP-binding region signature. | 34 | 57 | IPR017441 | GO:0005524(InterPro) | |
Sed02g1223 | 482 | Pfam | Protein kinase domain | 32 | 312 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1223 | 482 | CDD | STKc_CDK9_like | 34 | 312 | - | - | |
Sed02g1223 | 482 | MobiDBLite | consensus disorder prediction | 393 | 413 | - | - | |
Sed02g1223 | 482 | Gene3D | Phosphorylase Kinase; domain 1 | 28 | 115 | - | - | |
Sed02g1223 | 482 | MobiDBLite | consensus disorder prediction | 444 | 482 | - | - | |
Sed02g1223 | 482 | MobiDBLite | consensus disorder prediction | 468 | 482 | - | - | |
Sed02g1223 | 482 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 148 | 160 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1223 | 482 | SMART | serkin_6 | 28 | 312 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1223 | 482 | ProSiteProfiles | Protein kinase domain profile. | 28 | 312 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1223 | 482 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 351 | - | - | |
Sed02g1223 | 482 | FunFam | probable serine/threonine-protein kinase At1g54610 | 111 | 352 | - | - | |
Sed02g1223 | 482 | SUPERFAMILY | Protein kinase-like (PK-like) | 33 | 317 | IPR011009 | - | |
Sed02g1223 | 482 | PANTHER | CELL DIVISION PROTEIN KINASE | 32 | 312 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed02g1223 | 482 | FunFam | probable serine/threonine-protein kinase At1g54610 | 21 | 110 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1223 | Sed-Chr2:49098814 | Sed12g0863 | Sed-Chr12:5354875 | 1.70E-251 | dispersed | |
Sed02g1222 | Sed-Chr2:49097689 | Sed02g1223 | Sed-Chr2:49098814 | 5.80E-267 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78816 | PF00069 | Pkinase | 5.70E-68 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1223 | K08819 | - | csv:101217952 | 835.099 |