Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1224 ATGTATTTGAAGAGCCTGATTCAGGAAATGAGATCCAGGTCCCGCCGTGTGGTTCAGGACGGATCCACGGCCGCCGTCGGCGACGGTTTGGCGCAGAGCTGCTGGGCTTACATGCCTCAGGAGTTGCTGCGAGAGATTTTGATTAGAATCGAGAGCTCTGAGAATGCCTGGCCTTCGCGGAAGAGCGTCGTCGCCTGCGCCGGTGTTTGCCGGAGTTGGAGACGGATTACTAAGCAGATTGTTGAAACTCCCGAGGTTTCTGGCAGATTGACGTTTCCTATCTCCGTTAAGCAGCCTGGCTCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCTGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGATGATGGAAAGTTTCTTCTTGCTGCTCGGAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCACTACATGCTGATGATATGTCCAAGGCAAGTGGGACCTTTGTTGGAAAATTAAGGTCTAATTTTTTAGGAACCAAGTTCGCAATCTTTGATGGACAGCCTCCTCATGTGGGAGCCAAGATTTCAAAAAGTCGCTCCTCTAGGCTTGTGGCCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCGACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTGCAAGGGGTCCAAGGAGGATGCATTGTGTCATGGATGCTATTCCTGCCTCTGCTGTTGAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCCTCGAGCCGTACAGACTTTCTTCCATCAAAGATATTTTCTCGGTCGAAATCAAATGGGCCAAATCACGCAGACGATCAACCATCGGGATCTATAACTAATCAGAAAGACGGCCTTCTGGTGCTTAGAAACAAGGCCCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTCTGAACTTCCATGGGAGAGTGACAATAGCTTCAGTGAAAAACTTTCAGTTGGTAGCTTCACCTGAAAATGGAGCTGCTGGACCTCAACATGAGAAAATTATCCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGATTACAGATATCCAATCTCAGCATTTCAGGCTTTTGCCATCTGCCTTAGCAGCTTTGACACAAAGATAGCTTGTGAATGA 1173 47.49 MYLKSLIQEMRSRSRRVVQDGSTAAVGDGLAQSCWAYMPQELLREILIRIESSENAWPSRKSVVACAGVCRSWRRITKQIVETPEVSGRLTFPISVKQPGSRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFAIFDGQPPHVGAKISKSRSSRLVALKQVSPRVPAGDYPVAHISYELNVLGARGPRRMHCVMDAIPASAVEPGGVAPIQTEFSSSRTDFLPSKIFSRSKSNGPNHADDQPSGSITNQKDGLLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGAAGPQHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49103413 49107782 - Sed0022804.1 Sed02g1224 704892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1224 390 CDD F-box_AtTLP-like 35 79 - -
Sed02g1224 390 FunFam Tubby-like F-box protein 92 390 - -
Sed02g1224 390 MobiDBLite consensus disorder prediction 271 294 - -
Sed02g1224 390 ProSitePatterns Tub family signature 2. 375 390 IPR018066 -
Sed02g1224 390 PANTHER TUBBY-RELATED 31 389 - -
Sed02g1224 390 SUPERFAMILY F-box domain 30 78 IPR036047 GO:0005515(InterPro)
Sed02g1224 390 Gene3D Tubby Protein; Chain A 92 390 IPR025659 -
Sed02g1224 390 SUPERFAMILY Tubby C-terminal domain-like 84 390 IPR025659 -
Sed02g1224 390 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Sed02g1224 390 PRINTS Tubby superfamily signature 347 366 IPR000007 -
Sed02g1224 390 PRINTS Tubby superfamily signature 368 390 IPR000007 -
Sed02g1224 390 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Sed02g1224 390 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Sed02g1224 390 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Sed02g1224 390 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Sed02g1224 390 Gene3D - 30 81 - -
Sed02g1224 390 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
Sed02g1224 390 Pfam Tub family 96 385 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1224 Sed-Chr2:49103413 Sed10g2098 Sed-Chr10:37439486 1.30E-119 dispersed
Sed12g0866 Sed-Chr12:5360522 Sed02g1224 Sed-Chr2:49103413 5.90E-210 wgd
Sed02g1224 Sed-Chr2:49103413 Sed04g1822 Sed-Chr4:32962645 3.70E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37621 PF01167 Tub 1.20E-108 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1224 K19600 - csv:101217713 721.465