Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1253 ATGGACTCTGTAACTACAAATTCAGAACGTAGGCCATTTTCTATCAAATTGTGGCCTCCTAGTGAAAATACCAGGAAAATGCTTGTGGAACGGATGACAACTAACATTACCACCAAATCCTTTTTCACCCAAAAGTATGGTATTCTTGGTCAGGAAGAGGCCACAGATGAGTCTAAGAGAATTGAAGACATTGCTTTTACTACAGCTAATCATAATTTCGAAAAACAGCCTGATGGCGATGGAGGTGCTGCTGTGCAACTTTATGCCAAGGAATGTAGCAGGCTTCTTCTCGAGGTTCTTAAGAGAGGTCCTAAAGTCGAGGACGACAAGGAGGCTGGATCTGATATCGCTAGCGCTCCTTGCGAAACCTTTTTCGACATCTCAAAAGGGCGACGCGCCTTTATCGAGGCAGAAGAAGCGGAAGAACTTCTCAACCCTTTGAAAGAGGCAGGGAATTCTTATTACAAGATATGTTTTAGCAACCGAAGCTTTGGCTTAGAAGCCGCTCGTGTTACTGTGCCGATTCTGGCGTCCCTTAAGGATCAGTTAAAAGAAGTGGACTTGTCTGATTTTGTTGCAGGAAGAGTAGAGTTAGAAGCTCTAGAAGTAATGGAATTGTTCTCTGATGCTTTAGAAGGCAGCATTTTGAAGTCTTTGAACCTCTCCAACAACGCCTTAGGCGAGAAGGGTGTTAGAGCTTTCGCCTCGCTCTTGAAATCACAGACATGTTTAGAGGAGCTATATTTGATGAATGATGGCATTTCCAAGGAAGCTGCTCAGGCAGTAGTCGAGTTGATTCCTTCGACGGATAAGCTTAGAGTCCTTCAATTTCATAATAACATGACCGGTGACGAAGGGGCTCTTGCTATCGCAGAAGTCGTGAAGCGTTCTCCTCTATTGGAAGATTTCCGTTGCTCCTCTACGAGGATTGACTCAGAGGGGGGAGTTGCCTTATCTATTGCGCTCGAGACTTGTACCGACTTGAAAAAACTCGATCTTCGGGACAACATGCTTGGAGTGGAAGGTGGACTTGCTCTGAGTAAATCCCTTTCTTACCATGCTAATCTCAAGGAGTTGTATTTGAGCTACCTGAACTTGGAAGACGAAAGAGCCATTTCCATAGCCAATGTACTTAAAGACACTGCTCCTGAACTTGAAGTCTTGGAAATGGCTGGAAATGACATAACAGCTGAAGCTGCTGCTGCATTAGCTGCTTGCATAGCTCAAAAGCCCCATCTTACCAGTTTGAATTTGGGTGAGAATGAACTGAAGGATGAAGGAACTAGCCAGATCAGCAAGGCACTAGAGGATCACATTAAATTGAAGGAAGTTGATATGAGTACTAACTTGATAAGGCGGGCGGGGGCTCGGGTTTTAGCTCAGACTGTGGTTCACAAGCCTGGTTTTGTGTTGCTGAACATCAATGGAAATTTCATTTCTGATGAAGGTATTGATGAGTTGAAAGATATTTTCAAGAAATTTCCTGATATGCTTGGGCCCTTAGATGAAAATGATCCTGAAGGGGAAGATGGTAACAATGACGAGGAATCCGTAGCGGATGAGAACGATGAGGATGAACTGGGATCAAAACTGAAAAACCTTGAAGTTAATGGAGAGAAATAG 1623 43.87 MDSVTTNSERRPFSIKLWPPSENTRKMLVERMTTNITTKSFFTQKYGILGQEEATDESKRIEDIAFTTANHNFEKQPDGDGGAAVQLYAKECSRLLLEVLKRGPKVEDDKEAGSDIASAPCETFFDISKGRRAFIEAEEAEELLNPLKEAGNSYYKICFSNRSFGLEAARVTVPILASLKDQLKEVDLSDFVAGRVELEALEVMELFSDALEGSILKSLNLSNNALGEKGVRAFASLLKSQTCLEELYLMNDGISKEAAQAVVELIPSTDKLRVLQFHNNMTGDEGALAIAEVVKRSPLLEDFRCSSTRIDSEGGVALSIALETCTDLKKLDLRDNMLGVEGGLALSKSLSYHANLKELYLSYLNLEDERAISIANVLKDTAPELEVLEMAGNDITAEAAAALAACIAQKPHLTSLNLGENELKDEGTSQISKALEDHIKLKEVDMSTNLIRRAGARVLAQTVVHKPGFVLLNINGNFISDEGIDELKDIFKKFPDMLGPLDENDPEGEDGNNDEESVADENDEDELGSKLKNLEVNGEK 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49286237 49289086 + Sed0014120.1 Sed02g1253 704921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1253 540 Gene3D Ribonuclease Inhibitor 116 509 IPR032675 -
Sed02g1253 540 SMART LRR_RI_2 325 352 - -
Sed02g1253 540 SMART LRR_RI_2 382 409 - -
Sed02g1253 540 SMART LRR_RI_2 438 465 - -
Sed02g1253 540 SMART LRR_RI_2 241 268 - -
Sed02g1253 540 SMART LRR_RI_2 269 296 - -
Sed02g1253 540 SMART LRR_RI_2 353 380 - -
Sed02g1253 540 SMART LRR_RI_2 410 437 - -
Sed02g1253 540 SMART LRR_RI_2 213 240 - -
Sed02g1253 540 SMART LRR_RI_2 466 493 - -
Sed02g1253 540 MobiDBLite consensus disorder prediction 524 540 - -
Sed02g1253 540 MobiDBLite consensus disorder prediction 502 523 - -
Sed02g1253 540 MobiDBLite consensus disorder prediction 496 540 - -
Sed02g1253 540 Gene3D WPP domain 14 112 IPR038214 -
Sed02g1253 540 Pfam Leucine Rich repeat 216 235 IPR001611 GO:0005515(InterPro)
Sed02g1253 540 Pfam Leucine Rich repeat 385 404 IPR001611 GO:0005515(InterPro)
Sed02g1253 540 Pfam Leucine Rich repeat 410 427 IPR001611 GO:0005515(InterPro)
Sed02g1253 540 Pfam Leucine Rich repeat 325 347 IPR001611 GO:0005515(InterPro)
Sed02g1253 540 Pfam WPP domain 14 109 IPR025265 -
Sed02g1253 540 SUPERFAMILY RNI-like 134 509 - -
Sed02g1253 540 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 6 539 IPR045203 GO:0005096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1253 K14319 - - csv:101208192 852.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1253 Sed-Chr2:49286237 Sed12g0907 Sed-Chr12:5676890 6.80E-132 dispersed
Sed02g1252 Sed-Chr2:49286041 Sed02g1253 Sed-Chr2:49286237 5.50E-222 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69