Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1259 ATGGCGATCATCTCCGCCGACGGTAGGATTGCCCTGTCGGCCGCCGCGCATCTCCGGGATGCTCGTGCGACTGCGGCTGCACTCGGGCGGAACTTGAGGTCCGCGGAGTTTATGGGGAAGAAGCTTAAGGAGTTGAAACGAGTAGCTGTTGGTAAGACTGTTGGACGGCGTGTTTCTATGTCTATTGCCACTAATGTCGCCATTGGCGACCCTTTGTTGAGAGAAGTAGATATGGAGAAAAGGGACCCTCGGACTGTGGTGGCCATAATTCTTGGAGGAGGAGCGGGAACTCGTCTCTTCCCCCTCACTAAGCGCCGTGCCAAACCTGCTGTTCCAATTGGAGGAGCATATAGGCTGATAGACGTACCAATGAGCAACTGTATCAATAGTGGAATCAACAAAGTCTATATCCTCACTCAGTTCAATTCAGCTTCGTTAAATCGGCATCTTGCTCGAGCTTACAACTTCAGTGGTGGAGTCACCTTTGGCGATGGCTATGTAGAGGTTCTTGCAGCCACTCAAACTCCAGGGGTGGCTGGTAAAAATTGGTTTCAAGGTACAGCCGATGCCGTGCGACAATTCCACTGGCTCTTTGAGGATGCCAGAAGCAAGGATATTGAAGATGTGTTGATTCTATCTGGAGATCACTTGTACAGAATGGACTATATGGATTTTGTCCAGAATCATAGGCAAAGTGGTGCGGATATCACTATTTCTAGTCTGCCGATGGACGATAGCCGGGCCTCAGACTTTGGTCTAATGAAGATAGATGACAAGGGAAGGATAATTTCTTTCAGTGAGAAGCCTAAAGGAGACGAGCTGAAGGCAATGGCAGTAGACACAACCATTTTGGGACTCTCAAAAGAAGAAGCTCAAGATAAGCCATACATTGCTTCCATGGGAGTGTATGTCTTTAAGAAGGAGATTCTTTTGAATCTTTTAAGATGGCGCTTTCCAACTGCTAATGACTTCGGATCGGAGATAATCCCCGCCTCCGCCAAAGAGTTCTTTGTAAAGGCTTATCTCTTCAATGATTACTGGGAAGACATTGGGACAATTAGATCCTTCTTTGAAGCTAACCTTGCCCTGACAGCACAACCACCAAGGTTTAGCTTTTATGATGCTGCAAAACCAATGTTTACTTCAAGAAGAAATTTGCCACCTACAAAGATTGACCAGAGCAAGATTGTTGATTCTATCATCTCGCATGGAAGCTTCTTAACGAATTGCTTTATCGAACACAGTGTCGTCGGCATTCGGTCCAGAATTAACTCCAACGTTCACTTGAAAGACACTGTGATGCTTGGAGCAGACTACTATGAAACTGAGGATGAAGTTGCATCTTTGGCAGCTGAAGGAGGAGTACCAGTTGGAATAGGGACTGCATTATTGACAAGAATGCTAGAATTGGAAAGAACGTGGTCATTGCCAACTCAGAGGGCGTACGAGAGGCGGACAGATCTGCAGAAGGGTTCTACATACGTTCTGGCATTACCATCATATCAAAGAATGCAGTAA 1518 46.44 MAIISADGRIALSAAAHLRDARATAAALGRNLRSAEFMGKKLKELKRVAVGKTVGRRVSMSIATNVAIGDPLLREVDMEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLARAYNFSGGVTFGDGYVEVLAATQTPGVAGKNWFQGTADAVRQFHWLFEDARSKDIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISSLPMDDSRASDFGLMKIDDKGRIISFSEKPKGDELKAMAVDTTILGLSKEEAQDKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEIIPASAKEFFVKAYLFNDYWEDIGTIRSFFEANLALTAQPPRFSFYDAAKPMFTSRRNLPPTKIDQSKIVDSIISHGSFLTNCFIEHSVVGIRSRINSNVHLKDTVMLGADYYETEDEVASLAAEGGVPVGIGTALLTRMLELERTWSLPTQRAYERRTDLQKGSTYVLALPSYQRMQ 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49331965 49342501 + Sed0023380.2 Sed02g1259 704927

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1259 505 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 92 111 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed02g1259 505 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 183 191 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed02g1259 505 FunFam Glucose-1-phosphate adenylyltransferase 68 384 - -
Sed02g1259 505 SUPERFAMILY Trimeric LpxA-like enzymes 383 460 IPR011004 -
Sed02g1259 505 Gene3D Hexapeptide repeat proteins 385 467 - -
Sed02g1259 505 Pfam Nucleotidyl transferase 88 364 IPR005835 GO:0009058(InterPro)
Sed02g1259 505 CDD ADP_Glucose_PP 88 350 - -
Sed02g1259 505 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 47 461 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed02g1259 505 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 71 384 IPR029044 -
Sed02g1259 505 SUPERFAMILY Nucleotide-diphospho-sugar transferases 85 427 IPR029044 -
Sed02g1259 505 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 298 308 IPR005836 GO:0005978(InterPro)|GO:0008878(InterPro)
Sed02g1259 505 NCBIfam glucose-1-phosphate adenylyltransferase 86 455 IPR011831 GO:0005978(InterPro)|GO:0008878(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1259 K00975 - - csv:101208605 786.178
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1259 Sed-Chr2:49331965 Sed13g1624 Sed-Chr13:21423998 7.50E-165 dispersed
Sed02g1258 Sed-Chr2:49331965 Sed02g1259 Sed-Chr2:49331965 5.20E-262 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g451 . . . . . Bpe14g01312 . . . Cmo17g00248 . Cma14g01686 . Car14g01520 Sed02g1259 . Cpe03g01421 Bhi01g00844 Tan10g0872 Cmetu11g1384 Lac12g2316 Hepe05g1531 . Lcy11g1518 Cla06g00553 Cam06g0596 Cec06g0594 . Clacu06g0582 Cmu06g0577 Cre06g1343 . . Cone7ag0226 . Lsi05g01444 . . Cme06g00631 . . . . . . Bma02g00687 . . . Cmo14g01731 . Cma17g00261 . Car17g00235 Cpe12g00217 . Bhi12g01815 . . . . . . Cla05g00567 Cam05g0623 Cec05g0633 Cco05g0628 Clacu05g0619 Cmu05g0587 Cre05g0655 Lsi09g01345 . Chy06g00601 Cme11g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003296 1 2 1 1 1 2 2 2 2 2 2 2 1 2 2 1 2 1 1 2 2 2 2 1 1 2 2 2 2 1 49