Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1270 ATGGCTCATATTGCTGTGGAGAGAAATAGGAGAAGGCAAATGAATGAACATCTTAGGGTTTTAAGATCTTTGACTCCTTGTTTCTACATCAAAAGGGGAGATCAGGCGTCGATTATCGGGGGAGTGATTGAGTTCATCAAGGAGTTGCATCAGGTTTTGGAGTCATTAGAGTCGAATAAACGAAGGAGGAAGAGCCTAAGCCCTAGCCCTGGTCCTAGCCCGAGGCCACAGGTGGCGACTACCAACGGGTCGTCATCGTTAGGGTTTGGAGTTGAGGTTGGCGCATGTTGTAACTCATCGGTTGCGGATGTTGAAGCGAAGATTTCGGGTTCGAACGTGTTGTTGAAGATCATATCACGGCGAATTCCCGGGCAACTTTCGAAGATGATTAGTGTCTTGGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATCAGTAGTATGGATGACACTGTTCTATACTCTTTTGTGGTCAAGGTATATATATCGAAATAG 495 45.86 MAHIAVERNRRRQMNEHLRVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLESLESNKRRRKSLSPSPGPSPRPQVATTNGSSSLGFGVEVGACCNSSVADVEAKISGSNVLLKIISRRIPGQLSKMISVLERLSFEVLHLNISSMDDTVLYSFVVKVYISK 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49393077 49394006 + Sed0004225.2 Sed02g1270 704938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1270 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983(InterPro)
Sed02g1270 164 FunFam Transcription factor MUTE 1 67 - -
Sed02g1270 164 PANTHER TRANSCRIPTION FACTOR FAMA 1 162 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Sed02g1270 164 Pfam Helix-loop-helix DNA-binding domain 1 50 IPR011598 GO:0046983(InterPro)
Sed02g1270 164 MobiDBLite consensus disorder prediction 60 81 - -
Sed02g1270 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 62 IPR036638 GO:0046983(InterPro)
Sed02g1270 164 SMART finulus 4 55 IPR011598 GO:0046983(InterPro)
Sed02g1270 164 Gene3D - 1 66 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1270 Sed-Chr2:49393077 Sed02g1491 Sed-Chr2:50854112 2.00E-34 dispersed
Sed02g1269 Sed-Chr2:49393077 Sed02g1270 Sed-Chr2:49393077 1.60E-72 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37626 PF00010 HLH 7.70E-08 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1270 - - - 0.0