Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1274 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAACTACCTTCAAAACCCACCTCCGCCGCCGCCTCCGCCGCCGTACCTTTCTTCCTCCTCTTTCTATTACCCTTCTGAACCCTCATCGATTTCTCCGCCGCCGCCGCCGCAGTCCCACCACCCTCCTCCGCCGTACAGCCACCCTTACGGCCCCACTCCTCAGCCACTGCCGACAATTCACCCCTCCCCTGCTCCTCACTCCTATTACTTTTCCGGTGGGTTCAACAATTCGTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTCCACCCTTATTATGCCAATCAGAGTAATGGGTGGTCTCAAATTCGGCCGGCGATGGCCCCGCCGCCGCTGCTTCCGCCGTCACAGCCTTTGCCGTTTGTGGAGCATCGGCAGGCAAAGAAGGTTAGGAATGATGTGAATGTTCATAAGGATACTTTGAGGCTTGTGGTGGACGAGCAGAACCCTGATCATCACTTGGTTTCTTTCGTTTTTGATGCCCTTTATGATGGAAGCATTACCATTCTATTTTTTGCCAAGGAAGAGCCCAACTGTAGATTTGTTCCACTTTATCCCGACGCCTTCAAGCCAGTAAAAATCCCATTTCAGAAGGGCCCTGGTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTGGGGTTTTTCGAGTTGGATGATCTCTCAAAACCTTCACCTGCAGAAGACGTTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAATCCAAGGACGAACCAATTGGTGAACCTCAAGCAGATAATTCACATATGCAAATCACTCAAGCTGTTCTGGAGAAGAAAAATGGTAGTCCTTTCCTAGTTAAAGTGATCAGGCAACTACTATGGATTGATGGAGTACGATACGAGTTGCGTGAGATATTTGGAATAGGGAGTTCATCGGCTGAAGGTTTTGACGATGGCGACACCGGGAAGGAGTGTGTGATCTGCATGACTGAACCCAAGGATACCGCTGTATTACCGTGCCGACATATGTGCATGTGCAGTGAGTGTGCGAAGGAACTGAGGCATCAATCTAATAAGTGTCCTATTTGTCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA 1155 48.23 MGISWSNRRRNNYLQNPPPPPPPPPYLSSSSFYYPSEPSSISPPPPPQSHHPPPPYSHPYGPTPQPLPTIHPSPAPHSYYFSGGFNNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMAPPPLLPPSQPLPFVEHRQAKKVRNDVNVHKDTLRLVVDEQNPDHHLVSFVFDALYDGSITILFFAKEEPNCRFVPLYPDAFKPVKIPFQKGPGQKFFQPVGTGFDLGFFELDDLSKPSPAEDVFPLVISAETCSPSQSKDEPIGEPQADNSHMQITQAVLEKKNGSPFLVKVIRQLLWIDGVRYELREIFGIGSSSAEGFDDGDTGKECVICMTEPKDTAVLPCRHMCMCSECAKELRHQSNKCPICRQPIEELIEIKINNSDQ 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49424173 49428843 - Sed0007959.1 Sed02g1274 704942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1274 384 CDD mRING-HC-C3HC5_MGRN1-like 327 368 IPR045195 -
Sed02g1274 384 FunFam probable E3 ubiquitin-protein ligase LOG2 313 378 - -
Sed02g1274 384 PANTHER MAHOGUNIN 1 382 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Sed02g1274 384 SUPERFAMILY RING/U-box 328 374 - -
Sed02g1274 384 MobiDBLite consensus disorder prediction 38 71 - -
Sed02g1274 384 MobiDBLite consensus disorder prediction 14 29 - -
Sed02g1274 384 Pfam Zinc finger, C3HC4 type (RING finger) 327 373 - -
Sed02g1274 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 378 IPR013083 -
Sed02g1274 384 SMART ring_2 329 367 IPR001841 -
Sed02g1274 384 MobiDBLite consensus disorder prediction 1 71 - -
Sed02g1274 384 ProSiteProfiles Zinc finger RING-type profile. 329 368 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0658 Sed-Chr2:44360718 Sed02g1274 Sed-Chr2:49424173 1.10E-72 dispersed
Sed02g1274 Sed-Chr2:49424173 Sed12g0889 Sed-Chr12:5526155 1.30E-36 dispersed
Sed02g1274 Sed-Chr2:49424173 Sed04g1357 Sed-Chr4:27884137 1.60E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1274 K27504 - csv:101203938 592.038