Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1275 ATGCCGGAAAAAGGGTTTTTTCCGGCGACGTCAAATCCATGGCTTTTAAGATCATCTCTGCTACATTCCCATTTTGCGGCTTTAACGGCTGTGATTCTTCTCAGTATATTAGCTATTTGGACCATCAATGGCACCAATGTCATCAAAATCTTCAAGTCTCCTCAAGATTTCGCCTTGATCGAACCGGCGGTTCACAACGTGTCTCGGCCCGGTTGGGTTTCAGCTGAGCTCGAACCGAATTTCACCTCCAATCTTCTCGCTCTCTGGAAAGCTTCCGGCGGCGTAGACTCCCCGACGGCGGATATCGCCATCTCCGGCATGGAAGCTCCGGCGACGGTGGAGCTTTCAACGGGGGATGTTCACGAGTTTCGATTTCAAGCCCTTGATGAATATGGAAACCCTCGTTGTTCAGGTGGGGATTATTTTGAAACTGATCTTTCTGGGGAATTTTGGAAATCTAGGCCTTTTGTTAGAGATTTTGGTAATGGGACTTACTTGTTTTGGCTTCAAGTTCATCCTGATTTTGCTGGAGATTATAATCTCACTGTCATTCTTCTGTTTCGACGTTTCGAGGGGCTGAGATTTTCCCCGACCCGATTCGCCTACGATCGGGTGCTTCGGAGAATCAATGTTCGATTCGTGAAGACTTCTGTTGTGCTGCCTGAGATTAAGACTTGTAGTAGCTTGGATTTCGGTAGGGATATATGGACTGGAAGGTGGACTCGGCACGGTCGAAACGACGGTTGTGAGATAAGCGATGACGGGCGGTATCGGTGTCTACCATTGGAGTATCCTTGCCTGAGGCCTTGGTGTAATGGCTCATTAGGGTTGTTGGAGAGCAATGGTTGGGTTTATTCTGCACATTGTTCATTTGTTGTGTTTACTAGTGGTTCTGCTTGGGATTGCTTGAAGGGTAGATGGATCTTCTTTTGGGGTGATTCGAATCATGTTGATACAATACGGAACCTTCTCAATTTCGTGTTGGATTTGCCTGACATCCCTGCAGTTCCAAGGCGATTCGATAGGTATTTCTCGAACCCGAAGAATCAGTCTCAAACGGTTCGCATTACGAGCATCTTCAATGGTCATTGGAATGAAACACAGAACTATCATGGTTTGAATTCATTGAGAAATGAAGGATTCAGAAATCTTCTGTACGAGTACTTCTCCGAAGAGACCGTTCCCGACACGATCATCATGAACTCGGGCCTCCACGATGGTGTTCACTGGTTGAATATACGAGCTTTCTCAATTGGGGTAGACTATGCTGCATCTTTTTGGAAACAACTTCTGGATTCCATCAAGCAGAGGGGATTAACGGTCCCGAAAGTGTTATATCGAACCACGGTTGCAACCGGGGGCTATGCTCGAACCCTTGCATTCAATCCCAACAAAATGGAAATGTTCAACTGGATGGTGCTGGAGAAGTTGAAGGAATCGGGGATCATCCACGGCGTGATCGACAACTTTGACATGACATTCCCGTGGCATTTCGACAACCGGTGCAATGACGGGGTACATTACGGGCGAGCACCCGAAAAGCGTAAATGGAGGGATGGCATAATAGGGCACCAATACTTCTTAGACTTGATGTTGGCTCATATTCTTCTAAATGCACTCTGCACTTGA 1629 46.84 MPEKGFFPATSNPWLLRSSLLHSHFAALTAVILLSILAIWTINGTNVIKIFKSPQDFALIEPAVHNVSRPGWVSAELEPNFTSNLLALWKASGGVDSPTADIAISGMEAPATVELSTGDVHEFRFQALDEYGNPRCSGGDYFETDLSGEFWKSRPFVRDFGNGTYLFWLQVHPDFAGDYNLTVILLFRRFEGLRFSPTRFAYDRVLRRINVRFVKTSVVLPEIKTCSSLDFGRDIWTGRWTRHGRNDGCEISDDGRYRCLPLEYPCLRPWCNGSLGLLESNGWVYSAHCSFVVFTSGSAWDCLKGRWIFFWGDSNHVDTIRNLLNFVLDLPDIPAVPRRFDRYFSNPKNQSQTVRITSIFNGHWNETQNYHGLNSLRNEGFRNLLYEYFSEETVPDTIIMNSGLHDGVHWLNIRAFSIGVDYAASFWKQLLDSIKQRGLTVPKVLYRTTVATGGYARTLAFNPNKMEMFNWMVLEKLKESGIIHGVIDNFDMTFPWHFDNRCNDGVHYGRAPEKRKWRDGIIGHQYFLDLMLAHILLNALCT 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49430189 49433828 - Sed0015286.1 Sed02g1275 704943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1275 542 Gene3D Immunoglobulins 99 198 IPR013783 -
Sed02g1275 542 PANTHER CYTOCHROME P450 FAMILY PROTEIN 17 542 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1275 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0892 Sed-Chr12:5546947 Sed02g1275 Sed-Chr2:49430189 6.10E-275 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g429 . . . . . Bpe14g01322 . . . . Cma06g01437 Cma14g01675 Car06g01239 Car14g01509 Sed02g1275 Cpe08g00238 Cpe03g01414 Bhi01g00862 Tan10g0893 Cmetu06g1050 . Hepe05g1519 . Lcy11g1503 . . . . . . . Cone14ag0820 . Cone7ag0213 Cone4ag0204 Lsi05g01459 . . Cme06g00649 Blo02g00632 Blo07g00206 Bda11g00559 . . Bpe13g00624 Bma02g00697 Bma06g01538 . . Cmo14g01720 . . . . . . . . . . . . . Cla05g00581 Cam05g0639 Cec05g0648 Cco05g0643 Clacu05g0633 Cmu05g0601 Cre05g0670 . Csa03g01375 Chy06g00618 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005313 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39