Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1294 ATGCATCAGACGGCAGGCCGGAACCGTAAACCGTTCCTTCTCCTACGGCACAACGTCGGCACGTTGGCCCGGAGCGCCACCGCCTTCTGCGTTTCGGAGTTCATCCTCGTCGGCCGTCGGGACTTCAACGCCTTCGGTAGCCATGGCTCCACCTCTCACCTTCGCTTCCGCCATTTTCATTCCCTTCTCGACGCTCAAAATTTCCTCAAGGAGAAGGATTGTGACATATGTGGCGTGGAGATCGCTGACGGTGCCGTGGCTGTTAATCAGCATCCTTTCAAGAGGAACACCGCTTTTCTTCTCGGCAACGAGGGAACAGGACTTTCTGCTAAAGAGCGTGCAATCTGCGACTTCTTCATTTATATCCCACAGTATGGTGTCAGCACTGCTTCTTTGAATGTAACTGTAGCTGCTTCCATTGTCCTACAGCATTTTGGTGTTTGGGCAGGATTTACTGAAAGGTGTTGTGACGGTAACAAGTTTATAGTAGCCGAAAGACCAGTAAAACAGGTCAAGCGAAATTACTGCCACGAAACAGAAGAATCTATCACTGAAGAGCGAAAATGCAGGAGGGAGAATGCTTCAAAAGGTTTCTTTGATGAGGGAATGGTTGATGATTCATCATCCAACCTTCTTGATACATTGTTTATTGGCGAATGA 660 48.79 MHQTAGRNRKPFLLLRHNVGTLARSATAFCVSEFILVGRRDFNAFGSHGSTSHLRFRHFHSLLDAQNFLKEKDCDICGVEIADGAVAVNQHPFKRNTAFLLGNEGTGLSAKERAICDFFIYIPQYGVSTASLNVTVAASIVLQHFGVWAGFTERCCDGNKFIVAERPVKQVKRNYCHETEESITEERKCRRENASKGFFDEGMVDDSSSNLLDTLFIGE 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49546798 49550745 + Sed0005422.1 Sed02g1294 704962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1294 219 Pfam SpoU rRNA Methylase family 17 142 IPR001537 GO:0003723(InterPro)|GO:0006396(InterPro)|GO:0008173(InterPro)
Sed02g1294 219 SUPERFAMILY alpha/beta knot 16 143 IPR029028 -
Sed02g1294 219 CDD SpoU-like 16 145 - -
Sed02g1294 219 Gene3D - 13 154 IPR029026 -
Sed02g1294 219 PANTHER RRNA METHYLTRANSFERASE 3, 16 146 IPR051259 GO:0003723(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1294 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0882 Sed-Chr12:5491209 Sed02g1294 Sed-Chr2:49546798 1.60E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g396 . . . . . Bpe14g01162 . . . . Cma06g01447 . Car06g01250 . Sed02g1294 Cpe08g00227 . Bhi01g00892 Tan10g0918 Cmetu06g1283 . Hepe05g1500 . . . . . . . . . . . Cone7ag0193 Cone4ag0186 Lsi05g01478 . . Cme06g00669 Blo02g00565 . . . . . . . . Cmo06g01449 . . . . . . . . . . . . . . Cla05g00598 Cam05g0658 Cec05g0665 Cco05g0662 Clacu05g0651 Cmu05g0620 Cre05g0689 . Csa03g01394 Chy06g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013225 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 0 1 0 2 1 1 26