Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1301 ATGGAACACGGAAAGATGGCAACAACTCTACTTGCGATTATGGTTGCTGTTCACTGGGCAGGCGTGGCCTCACAATCGGACTGCACGAATGCGCTGATCAGCTTGTCGCCATGCCTGAATTACATTACAGGAAACTCCTCCACCCCATCAGGATCCTGTTGCACACAGCTTGTGAGCGTTGTCCGCTCACAGCCGCAGTGCTTGTGCCAGGTCCTGAATGGCGGTGGCTCGTCGTTTGGGGTCAATATCAACCAAACCCAGGCTCTGGCTCTGCCCCGAGCTTGCAATGTTCAGACTCCTTCCATCAGCAACTGCAATGTTGGTTCTCCCACCGGCTCTCCTTCTCCTGCAGGACCACCAGAATCTTCAAGCAATGTTCCTTCAGGAACTGGCTCTAAGACAGACAACAACTCATCAGATGGAAGCTCCATCACTTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCGTCTACATATGCTTCGGCTTTCAAGTTGTACTGA 504 51.39 MEHGKMATTLLAIMVAVHWAGVASQSDCTNALISLSPCLNYITGNSSTPSGSCCTQLVSVVRSQPQCLCQVLNGGGSSFGVNINQTQALALPRACNVQTPSISNCNVGSPTGSPSPAGPPESSSNVPSGTGSKTDNNSSDGSSITLSKPLLFSILLASTYASAFKLY 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49596472 49597207 + Sed0011893.1 Sed02g1301 704969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1301 167 MobiDBLite consensus disorder prediction 106 141 - -
Sed02g1301 167 MobiDBLite consensus disorder prediction 122 141 - -
Sed02g1301 167 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 27 107 IPR036312 -
Sed02g1301 167 Gene3D - 25 102 IPR036312 -
Sed02g1301 167 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 20 143 IPR043325 -
Sed02g1301 167 CDD AAI_LTSS 35 97 - -
Sed02g1301 167 PRINTS Plant phospholipid transfer protein signature 82 99 IPR000528 GO:0006869(InterPro)|GO:0008289(InterPro)
Sed02g1301 167 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869(InterPro)|GO:0008289(InterPro)
Sed02g1301 167 PRINTS Plant phospholipid transfer protein signature 48 62 IPR000528 GO:0006869(InterPro)|GO:0008289(InterPro)
Sed02g1301 167 SMART aai_6 28 105 IPR016140 -
Sed02g1301 167 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 25 104 - -
Sed02g1301 167 Pfam Probable lipid transfer 12 105 IPR016140 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1301 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1301 Sed-Chr2:49596472 Sed08g2765 Sed-Chr8:39275537 6.20E-07 dispersed
Sed12g0942 Sed-Chr12:5869225 Sed02g1301 Sed-Chr2:49596472 3.90E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77