Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1330 ATGGATTTGAAAGGAAAAGATATGGGGGATAGTACTCTGAATTCAAAGGTTGCTGGTATGGGAAGCCTTAGCAGCAAAGATATGATATTCAGAGCAGATAAGATTGATTTGAAAAACCTTGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCAAAGAATGTTGATGGGGAGACTCAAAAGCCTAAGGAGGAGTGGGAGATTGATCTGGCTAAACTTGATATCCGATATGTTGTAGCTCATGGGACTTACGGAACAGTGTTCAGGGGTACATATGACGAGCAAGATGTTGCAGTGAAGCTATTGGACTGGGGGGAGGATGGTCTTGTCACATCTGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCATAAGCTTGACCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAAAAGCTCTTCAATGGATGACCAAAACTCCCTTCCATCTAGGGCCTGCTGCGTTGTTGTTGAGTATCTTCCTGGTGGGACATTAAAACAATACTTGATAAGGATAAGGAAAAAGAAACTTGCCTTTAAGGTTGTGATTCAATTAGCTTTGGACCTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATCGTACATCGTGATGTCAAAACTGAAAATATGTTGCTAGACAGTAATAGAACCCTAAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCTAGAGACATGACTGGGGAAACTGGTACCCTTGGATACATGGCTCCAGAGGTTCTTGATGGGAAGCCGTACAATAGAAGATGTGATGTCTATAGCTTTGGTATCTGCTTATGGGAAATTTACTGCTGCGATATGCCTTACCCTGATCTTAGTTTTGCTGACGTGTCATCTGCAGTTGTTCGACAGAATCTGCGACCCGAAATCCCAAAATGCTGTCCGAGTTCTCTGGCTACCGTGATGAAGAAATGCTGGGATGGCAACCCATCCAAACGCCCTGAAATGGATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGTAAAGGAGGTGGGATGATTTCTGATGATCAAACCTCAAGCTGTTTCTGTTTCAGCCAGCCCCGCGGTCCGTGA 1146 43.89 MDLKGKDMGDSTLNSKVAGMGSLSSKDMIFRADKIDLKNLDMQLEKHLSRVWSKNVDGETQKPKEEWEIDLAKLDIRYVVAHGTYGTVFRGTYDEQDVAVKLLDWGEDGLVTSAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPSKSSSMDDQNSLPSRACCVVVEYLPGGTLKQYLIRIRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDVKTENMLLDSNRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPKCCPSSLATVMKKCWDGNPSKRPEMDEVVKMLEAIDTSKGGGMISDDQTSSCFCFSQPRGP 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49672867 49677347 - Sed0007382.1 Sed02g1330 704998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1330 381 SMART serkin_6 74 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1330 381 Pfam Protein tyrosine and serine/threonine kinase 78 352 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1330 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1330 381 CDD STKc_MAP3K-like 80 352 - -
Sed02g1330 381 FunFam Serine/threonine-protein kinase HT1 178 363 - -
Sed02g1330 381 Gene3D Phosphorylase Kinase; domain 1 63 156 - -
Sed02g1330 381 SUPERFAMILY Protein kinase-like (PK-like) 54 352 IPR011009 -
Sed02g1330 381 FunFam Kinase suppressor of Ras 1 63 158 - -
Sed02g1330 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 353 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Sed02g1330 381 ProSiteProfiles Protein kinase domain profile. 74 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed02g1330 381 Gene3D Transferase(Phosphotransferase) domain 1 178 371 - -
Sed02g1330 381 PRINTS Tyrosine kinase catalytic domain signature 213 231 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1330 381 PRINTS Tyrosine kinase catalytic domain signature 323 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1330 381 PRINTS Tyrosine kinase catalytic domain signature 175 188 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed02g1330 381 PRINTS Tyrosine kinase catalytic domain signature 279 301 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1330 Sed-Chr2:49672867 Sed02g1332 Sed-Chr2:49672867 2.40E-224 dispersed
Sed02g1330 Sed-Chr2:49672867 Sed02g1331 Sed-Chr2:49672867 2.40E-224 tandem
Sed12g0950 Sed-Chr12:5923623 Sed02g1330 Sed-Chr2:49672867 1.90E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78818 PF07714 PK_Tyr_Ser-Thr 2.70E-59 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1330 - - - 0.0