Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1330 | ATGGATTTGAAAGGAAAAGATATGGGGGATAGTACTCTGAATTCAAAGGTTGCTGGTATGGGAAGCCTTAGCAGCAAAGATATGATATTCAGAGCAGATAAGATTGATTTGAAAAACCTTGATATGCAGCTGGAAAAGCACTTGAGCCGTGTTTGGTCAAAGAATGTTGATGGGGAGACTCAAAAGCCTAAGGAGGAGTGGGAGATTGATCTGGCTAAACTTGATATCCGATATGTTGTAGCTCATGGGACTTACGGAACAGTGTTCAGGGGTACATATGACGAGCAAGATGTTGCAGTGAAGCTATTGGACTGGGGGGAGGATGGTCTTGTCACATCTGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCATAAGCTTGACCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAAAAGCTCTTCAATGGATGACCAAAACTCCCTTCCATCTAGGGCCTGCTGCGTTGTTGTTGAGTATCTTCCTGGTGGGACATTAAAACAATACTTGATAAGGATAAGGAAAAAGAAACTTGCCTTTAAGGTTGTGATTCAATTAGCTTTGGACCTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATCGTACATCGTGATGTCAAAACTGAAAATATGTTGCTAGACAGTAATAGAACCCTAAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCTAGAGACATGACTGGGGAAACTGGTACCCTTGGATACATGGCTCCAGAGGTTCTTGATGGGAAGCCGTACAATAGAAGATGTGATGTCTATAGCTTTGGTATCTGCTTATGGGAAATTTACTGCTGCGATATGCCTTACCCTGATCTTAGTTTTGCTGACGTGTCATCTGCAGTTGTTCGACAGAATCTGCGACCCGAAATCCCAAAATGCTGTCCGAGTTCTCTGGCTACCGTGATGAAGAAATGCTGGGATGGCAACCCATCCAAACGCCCTGAAATGGATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGTAAAGGAGGTGGGATGATTTCTGATGATCAAACCTCAAGCTGTTTCTGTTTCAGCCAGCCCCGCGGTCCGTGA | 1146 | 43.89 | MDLKGKDMGDSTLNSKVAGMGSLSSKDMIFRADKIDLKNLDMQLEKHLSRVWSKNVDGETQKPKEEWEIDLAKLDIRYVVAHGTYGTVFRGTYDEQDVAVKLLDWGEDGLVTSAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPSKSSSMDDQNSLPSRACCVVVEYLPGGTLKQYLIRIRKKKLAFKVVIQLALDLSRGLSYLHSKKIVHRDVKTENMLLDSNRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPKCCPSSLATVMKKCWDGNPSKRPEMDEVVKMLEAIDTSKGGGMISDDQTSSCFCFSQPRGP | 381 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 49672867 | 49677347 | - | Sed0007382.1 | Sed02g1330 | 704998 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1330 | 381 | SMART | serkin_6 | 74 | 355 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1330 | 381 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 352 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1330 | 381 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 219 | 231 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1330 | 381 | CDD | STKc_MAP3K-like | 80 | 352 | - | - | |
Sed02g1330 | 381 | FunFam | Serine/threonine-protein kinase HT1 | 178 | 363 | - | - | |
Sed02g1330 | 381 | Gene3D | Phosphorylase Kinase; domain 1 | 63 | 156 | - | - | |
Sed02g1330 | 381 | SUPERFAMILY | Protein kinase-like (PK-like) | 54 | 352 | IPR011009 | - | |
Sed02g1330 | 381 | FunFam | Kinase suppressor of Ras 1 | 63 | 158 | - | - | |
Sed02g1330 | 381 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 50 | 353 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Sed02g1330 | 381 | ProSiteProfiles | Protein kinase domain profile. | 74 | 355 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed02g1330 | 381 | Gene3D | Transferase(Phosphotransferase) domain 1 | 178 | 371 | - | - | |
Sed02g1330 | 381 | PRINTS | Tyrosine kinase catalytic domain signature | 213 | 231 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1330 | 381 | PRINTS | Tyrosine kinase catalytic domain signature | 323 | 345 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1330 | 381 | PRINTS | Tyrosine kinase catalytic domain signature | 175 | 188 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed02g1330 | 381 | PRINTS | Tyrosine kinase catalytic domain signature | 279 | 301 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1330 | Sed-Chr2:49672867 | Sed02g1332 | Sed-Chr2:49672867 | 2.40E-224 | dispersed | |
Sed02g1330 | Sed-Chr2:49672867 | Sed02g1331 | Sed-Chr2:49672867 | 2.40E-224 | tandem | |
Sed12g0950 | Sed-Chr12:5923623 | Sed02g1330 | Sed-Chr2:49672867 | 1.90E-192 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78818 | PF07714 | PK_Tyr_Ser-Thr | 2.70E-59 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1330 | - | - | - | 0.0 |