Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1335 ATGGCAACCTTGTTGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATCAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTTACCGACATGGATGCTAAAGTTAAAGCAATGATCAAACTCATTGAAGAAGATGCAGACTCTTTTGCAAGAAGAGCAGAAATGTACTACAAGAAACGTCCAGAGCTTATGAAATTAGTCGAGGAATTCTACCGAGCTTACCGTGCTTTAGCTGAAAGATACGACCATGCAACTGTGGAGCTTCGTCATGCACATAAAACCATAGCTCAAGCATTTGACAACCAAATGCCTCCTTTTATGTTTTCTGATGAGTCAGTTTCAGGGTCTTGTATTTCTGAAGCTGAATCCCACACACCAGAAATGAACCTCCAAAACCATGCACTGCATGATCAGCACAAGGAGTTGGGATGTTTGTCATCTACAAACCAACATCTATTAAGAATGAAATGTGATAATGCTGGGGAACCTAATTCCCGTGTTAGTAAAGGGGGTTTGAAACAGCTCAATGAAATGTTTGCATCAAGAAAAAATGTGCTACAAAGTTTAGAGGTGAGTGAGGGAAGTATCGAACCACAATCAGATTTTCGTGAAGGTGAATTCGATGACCATAACTTGCAAAATGTATCCCCTCAGTTATCAAGTAAAATTTATGATGTCAAATCTCAGGTCCTGTGTGATTCAGGAAATGATGAAAATTTGGATGCTGAACTTCAAAATTTAAGAAGAAGACTGAATCAGATGGAAGCTGAAAAGGAAGGTTTATTTCTTAAATACCAAAGTTCTTTAGAAAAGTTATCCAGCTTAGAGAAAGAACTTAGTTCTGCTCAGAAAGATGCCGGTGGACTTGACGAACGAGCGAGTAAAGCTGAAATCGAAATAAAAATATTGAAGGAGGCCCTTGTAGATCTTAAAGAAGAGAAGAATGCTGGCCTTCTACAATATAATCAATGTTTGCACAAGATATCTAGCCTAGAAAAGCTATTATCTGTAGCCCAAAAAGATGCTGAAGGCCACAATGATAGAGCTGCTAAGGCAGAAATTGAAGCTCAGAACCTTGAGCAACAACTTTTGAGATTAGCAGCCGAAAAGGAGGCCAGTCTTCTTCAGTATGAGCAATGCCTAAAGAAGGTATCTGCTTTAGAGACTAAAATCTCCCTTTCTGAACATTCTGCAAGAATCCTTGATGAACTAATGAATAGTTCAGAAACAGAAGTCAAAGAACTGAAGAGAGCTCTTGATGAACTGAATGAAGAGAAGGAAGTGGCTTCTTGCCAGTATGAGCAGTGCTTAGAGAAAATTGCCAAGATGGACACTGAAATATCTCGCGCTCAGGATGACGCAAAACGTCTGAAAGGTGAGCTTATGATGACTAATGCAAAACTGGAGACAACAGAAGAAAGATGTGCTTGTTTAGAGCAGTCAAATCATTCACTGCAGTTCGAGGCAGACAAACTTGTGCAGAAGATTGGTATTAAGGATCAAGAGCTTGCAGAAAAACAAGATGAGTTGAAGAAACTTCAGAGTTTAATGAACGAAGAGCAGTCACGATTTGTACAAGTTGAAAACACTCTTCACACTCTTCAGAAGTTGCATTGTCAATCTCAGGAGGAGCAGAGAGCTCTTACCTTGGAGCTTAAAAATGGTCTCATGATGTTGAAGGATTTGGATGTATGCAAACATGGTATGGACGAAGAGCTTCAACGAGTTAAGGATGAAAACAAAATACTGAATGAAATGCATTTTTCTTCCAATACTTCAATGAAGAGCCTAGAGGATCAATTATCTGGCTTGACGGAGATGAAAGAGAAGCTTGAAGAGGTTGTTGCCAAAAAAGAAGGGCAGAGCAACTTGCTTGAGAATGAAATTCATCATTTGAGAGACGAAATCAAGGGCTTAACTGAAAGATGCCTTGGCATAATGAGACAATTGGAGGCAGTAGGTTTAGATCCTGATTCCCTTGGATCCTCTTTGAAGGAATTTCAGGAGGAGAATGCCAAACTGAGGGAGGCTTGTGAAAAGGACAGGAACAAGATCAAAGCACTTTATGAGAAACTCGGTTATATGGATGAACTTTCGAAGGAAAATTCCACTCTCAAGGCATCTTTAGCTGAATTGAATACTGAATTGGAGAGGCTAAGGGAGAAAGTCAAAGAATCCCAGGAGCTTTCCCAATTTACCCTGGAAGAAATAACTGCTCTTGTTGCTGAGAAATCTTCCCTGCTTTCACAATTGCAAAGTGTGACTGAGAATATGTTGAAACTTTTAGAGAAGAACACATTGCTGGAAGACTCCATATCTGGTGCAAATAAAGAGCTTGAAGGTTTAAGGGCAAAATCAAAGGGGTTAGAAGAATTTTGCCAGTTGCTGAAGGATGAAAGGATTAATCTTCTGAACGAAAGAGGCGTGTTGGTGGCTCAGCTTGAAAACATTGAACTAAGACTAGGAAACCTGGAAAAGAAGTTTACAAATCTAGAAGAAAAGTATTCTGATCTGGAAAATGACAAATACTCTGCCTTACATCAAGTAGAAGAGTTGAGGTTTTCCCTTCTCATGGAAGAACAAGAGCATACAAGTTACAAGCAGTCGACCGAGGTGAGACTTGCTGGTTTGGAGGACCATGTCCGTACCCTACAAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAACTAATAGAGAAGACTGTAAATGCACAGCTTGAAATCTACATCTTGCAGAGGTTTATTGAGGATTTGGAAGGGAAAAATATTTCCTTGCTTATTGAATGTGAACAATATGACGAGGCATCCAAGTTATCAGACAAACTTATTGCTGAGTTGGAAGGTGAGAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATCAATAAGCTAAGAGCAGGAATCCGTAAGGTATTAATGGCTCTTCAATTTGACCAAGATTATGAGCAAGGAAATATGAAAGAAGAGAGAATTTTGATAGTGGATATTTTGTCCAGAATCGAAAATTTGAAAACTTCCATGTACAAAAACAAAGACAAGAAGCAGGAACTTATCGTTCAGAACTCAGTTTTATCAACTCTTTTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTTTGTCAGAGAAAAAGAATATTATGCAGGAGTTAAAAATCATGAAGGGCCAATTAGAAATGCATGAAAACGACAAGCACGAGCTTCTGGAGACAGAAAACCAGTTGATGATGGAAGTTAACCAGCGGGAGCAACAAGATCTACTGCTGAAGGCTGAGATTGAAACTCTAAATGCTAAGCTGATAAATCTTCAAGGAGCCTGTCTTATGCTGGAAAAGGAAAATTATAATGTTTCTGAAGAAAAAAAATCTTTGCTCAAGAAACTTTTGCACCTTGAAGAGGACAAGAGTACTATTCAAGAAGAGCAGCACAATTTATTCATACAGGAAGTTATTGCTTTCGATATCCTGTCATCGATTTTTGAAAGCTTCAAAACTGAGAAATTCTTGGAAATAGAAAAGCTTGTTCAAGACATTTGTCATCTCCAAATGATTAATTCTGATACAAGGGAAGAAATTGTAAAGTTGGCAGATAAATTTCAGTCGAAGGAAGTTGAAATTTTGCATTTAAATGGATCAGTAGACCAATTGGCTAAGGAGCTACATGAAGTAAATGACTTGAACGATCAACTTAACCATCAAATTTTACTTGGAAATGATTTTCTGAGACTGAAGGCTGAAGAGCTTTCTGAAACAGAAGAGGAGTTTAAAAATTCAAAAAACCTCAATGTGAAATTGTCTGATGCTGTTGAGAAGCTCAAGATGGAAGGTAAAGAAACAATGATGATCAAACACAGTCTACTAAATGAAAATCTTGAACTTTCTGAAAAGTGCTTAAGCCAGGAGAATGAGATTCAATTCCTCTGTGAAGTGAACGAAAATTTAAAATCCAAAGTGGATTTGTTGAACGAGGAGATCGAGAAACACAAAATTAGAGAGGAATCTCTGAATTCAGAACTACAGGACAAAAGAGATGAGTTTGAACTATGGGAAGCTGAAGCCACAACATTCTACTTTGATCTTCAAATCTCATCAATTCGGGAGGCTTTATATGAACATAAGGTTCATGAACTTGCACAGGCTTGTGAAAATACAGAAGATGAGAATGCTGCAAAAACTATGGAGATTGAACAGCTCAGAGAAAGAGTAAGTTCCCTAGAAAATGAAATTGGAGAAATGGAGGCAAAGCTGTCTGAATATAAGCCTGCCATAGCTTCTCTGAGGAAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAACCTAGGGATATCTGTAGAGGTTTTATAGGAGAAGAGGACAAGGACACCACAATTCATGTTCATCACAGTAGCTGTTATGTCCACAACGACGAGATATTAGATTTGCAGAAAGTTGGGGCCATGATAAAAGCGGTTGAGAAGGCCGTGATTGAAGAAAAGGAAAAACTCAACAAAGAAGCTGGCGACAAACATGTCAAAGACTTCAAATCAGAAGGAACCTTGCATAAAAAAGCAACAACTAACGAAGAGAAAGATTTGAGGGATGGAATTACCAATGAACTGAAGGCAAGAAGGAACAAACCTGACAATGGAATATTGATGAAAGATATTCCACTGGATCATGTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAGACCAGTGATCAAATGCTCAAGTTGTGGGAAACTTCTGAGCAAGATTGTGATCGGAGTTTGATTGATAGCGTGCCACAAAGCCCATCAGACCCGCAAATCAAGTTCCCGCAGTTAGAAGTTGTAGAACATAAGAGTTCAGAGTTTTCTTCAGAATTGCAAGTAGAGAAGGAGTTGAGCATTGATAGATTGGAGTTATCGCCTAGCATTAGAGAACGAATTCGACGAGGCCGAAAAGGAAAGATTTTAGAGAGACTTGATTCAGATGTTGTTCAGTTGACAGGCCTTCTAACAAGCGTTCAAGATTTGAAAAAGAGAATCGAAGTGAACACCCGTGAAATGGCTAGAAACAACGAATATGACACGGTTGAGAAACATTTAAAAGAAGTAGAGGAAGCCATCTACCAGCAAGTAAATATAAACGGTCAACTGAAGCAGAATTTGGAACGCAGTACCTCATCTTTCGAGCGAAGGCCATCAGTAGAAACGGAGGGGACTGGAAACATCCCCTTAAGCAAACTAACAGAACATACACAAAGAGGATCAGAGAAGATAGGAAAACTACACTTCGAAGTACAGAACATTCAGCGCGTTGTGCTGAAACTCGAATCCGAGAAGAAAAGAAAAGGGAAGAACAGATTCTCCAAGAGTAAACCCGGTGTTATTCTGAGAGACTTCATTCACAAAAGCGGAAAACACAGCGAAAGACGGAAGAAGGCATGTGCTTGTGGATGTTCAAAACCTTCTACTCATGGAGACTGA 5475 39.05 MATLLHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATVELRHAHKTIAQAFDNQMPPFMFSDESVSGSCISEAESHTPEMNLQNHALHDQHKELGCLSSTNQHLLRMKCDNAGEPNSRVSKGGLKQLNEMFASRKNVLQSLEVSEGSIEPQSDFREGEFDDHNLQNVSPQLSSKIYDVKSQVLCDSGNDENLDAELQNLRRRLNQMEAEKEGLFLKYQSSLEKLSSLEKELSSAQKDAGGLDERASKAEIEIKILKEALVDLKEEKNAGLLQYNQCLHKISSLEKLLSVAQKDAEGHNDRAAKAEIEAQNLEQQLLRLAAEKEASLLQYEQCLKKVSALETKISLSEHSARILDELMNSSETEVKELKRALDELNEEKEVASCQYEQCLEKIAKMDTEISRAQDDAKRLKGELMMTNAKLETTEERCACLEQSNHSLQFEADKLVQKIGIKDQELAEKQDELKKLQSLMNEEQSRFVQVENTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDVCKHGMDEELQRVKDENKILNEMHFSSNTSMKSLEDQLSGLTEMKEKLEEVVAKKEGQSNLLENEIHHLRDEIKGLTERCLGIMRQLEAVGLDPDSLGSSLKEFQEENAKLREACEKDRNKIKALYEKLGYMDELSKENSTLKASLAELNTELERLREKVKESQELSQFTLEEITALVAEKSSLLSQLQSVTENMLKLLEKNTLLEDSISGANKELEGLRAKSKGLEEFCQLLKDERINLLNERGVLVAQLENIELRLGNLEKKFTNLEEKYSDLENDKYSALHQVEELRFSLLMEEQEHTSYKQSTEVRLAGLEDHVRTLQEESRVSKEEIEELIEKTVNAQLEIYILQRFIEDLEGKNISLLIECEQYDEASKLSDKLIAELEGENLEQQVEVEFMYNEINKLRAGIRKVLMALQFDQDYEQGNMKEERILIVDILSRIENLKTSMYKNKDKKQELIVQNSVLSTLFKQLSLESEELLSEKKNIMQELKIMKGQLEMHENDKHELLETENQLMMEVNQREQQDLLLKAEIETLNAKLINLQGACLMLEKENYNVSEEKKSLLKKLLHLEEDKSTIQEEQHNLFIQEVIAFDILSSIFESFKTEKFLEIEKLVQDICHLQMINSDTREEIVKLADKFQSKEVEILHLNGSVDQLAKELHEVNDLNDQLNHQILLGNDFLRLKAEELSETEEEFKNSKNLNVKLSDAVEKLKMEGKETMMIKHSLLNENLELSEKCLSQENEIQFLCEVNENLKSKVDLLNEEIEKHKIREESLNSELQDKRDEFELWEAEATTFYFDLQISSIREALYEHKVHELAQACENTEDENAAKTMEIEQLRERVSSLENEIGEMEAKLSEYKPAIASLRKDVESLKHIVLPQPRDICRGFIGEEDKDTTIHVHHSSCYVHNDEILDLQKVGAMIKAVEKAVIEEKEKLNKEAGDKHVKDFKSEGTLHKKATTNEEKDLRDGITNELKARRNKPDNGILMKDIPLDHVQRRSKRESSETSDQMLKLWETSEQDCDRSLIDSVPQSPSDPQIKFPQLEVVEHKSSEFSSELQVEKELSIDRLELSPSIRERIRRGRKGKILERLDSDVVQLTGLLTSVQDLKKRIEVNTREMARNNEYDTVEKHLKEVEEAIYQQVNINGQLKQNLERSTSSFERRPSVETEGTGNIPLSKLTEHTQRGSEKIGKLHFEVQNIQRVVLKLESEKKRKGKNRFSKSKPGVILRDFIHKSGKHSERRKKACACGCSKPSTHGD 1824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49704147 49712553 + Sed0008526.1 Sed02g1335 705003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1335 1824 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779(InterPro)
Sed02g1335 1824 Gene3D - 553 699 - -
Sed02g1335 1824 Coils Coil 403 479 - -
Sed02g1335 1824 Coils Coil 1128 1148 - -
Sed02g1335 1824 Coils Coil 669 696 - -
Sed02g1335 1824 SUPERFAMILY Tropomyosin 243 451 - -
Sed02g1335 1824 Coils Coil 501 535 - -
Sed02g1335 1824 Coils Coil 949 969 - -
Sed02g1335 1824 Coils Coil 340 381 - -
Sed02g1335 1824 PANTHER PROTEIN NETWORKED 4A 350 1077 IPR051861 -
Sed02g1335 1824 MobiDBLite consensus disorder prediction 1798 1824 - -
Sed02g1335 1824 Coils Coil 1311 1359 - -
Sed02g1335 1824 Coils Coil 1388 1422 - -
Sed02g1335 1824 Coils Coil 1248 1275 - -
Sed02g1335 1824 Coils Coil 770 790 - -
Sed02g1335 1824 Coils Coil 1037 1085 - -
Sed02g1335 1824 Coils Coil 242 318 - -
Sed02g1335 1824 Coils Coil 700 741 - -
Sed02g1335 1824 Coils Coil 1100 1120 - -
Sed02g1335 1824 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779(InterPro)
Sed02g1335 1824 Coils Coil 872 906 - -
Sed02g1335 1824 MobiDBLite consensus disorder prediction 1516 1551 - -
Sed02g1335 1824 Coils Coil 1220 1240 - -
Sed02g1335 1824 Coils Coil 571 591 - -
Sed02g1335 1824 MobiDBLite consensus disorder prediction 1729 1747 - -
Sed02g1335 1824 Coils Coil 921 941 - -
Sed02g1335 1824 Coils Coil 819 846 - -
Sed02g1335 1824 MobiDBLite consensus disorder prediction 1721 1749 - -
Sed02g1335 1824 MobiDBLite consensus disorder prediction 1558 1575 - -
Sed02g1335 1824 MobiDBLite consensus disorder prediction 1516 1576 - -
Sed02g1335 1824 Coils Coil 599 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1335 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1335 Sed-Chr2:49704147 Sed12g0959 Sed-Chr12:5963785 0.00E+00 dispersed
Sed12g0958 Sed-Chr12:5963519 Sed02g1335 Sed-Chr2:49704147 0.00E+00 wgd
Sed02g1335 Sed-Chr2:49704147 Sed05g0055 Sed-Chr5:272939 9.50E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44