Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1338 ATGAAAGCCTCAAACCCTCTCCTTCTCATCTCCATTCTCATCTTCCTCCCCAAACCTTCCCTTCAAGCATCTCCGCCGCGGTCGCCACCGCCATTCATCCCGAACCCGAGACTCCTCACGGCCTACACCGCTCTCCAAGCTTGGAAACACGCCATCCTCTCCGACCCGACCAACTTCACCGCCAACTGGTACGGCCCCAACGTATGCAACTACTCCGGTATCTTCTGCGCCCCCGCCCCCGACGACCCCGACATCCTCACCGTGGCAGGCATCGACCTCAACCACGCCAACCTCTCGGGCACCCTACCCGACGACCTCGGCCTACTGACCGACCTCGCTCTGTTCCACATTAACTCCAATGGCTTCTGCGGCACCGTCCCCGACTCCTTCCGATACCTGTCTCTCCTCTTCGAGCTCGATCTCAGCAACAACGACTTCTCCGGCGAGTTCCCCTCTGTAATTCTCTCTCTCAATTCCCTCAAATTTCTCGACATTCGATTCAACAAATTCCATGGCGAAATCCCTTCTCCCCTGTTTCACATGAACCTCGATGCTCTGTTCATCAACAACAACAATTTCACATTCTCCCTCTCCGAAAACATCGCCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAACAACAACATTAATGGCTGCCTTCCCCGGAGTTTGTCGAATATGAACCAAACACTCGATGAAATCATAATCACGAATAGTGGGTTGAATGGGTGTTTGCCGCCGGAAATTGGGTCGTTGACCAATCTCACTGTCTTTGATGTCAGTGAAAACAACCTCGTCGGACCGTTGCCGGGGACCATGGCCGGAATGAAGAAATTGGAGCAGTTGAACGTCGCGCACAACCAATTATCCGGCGAGATTCCGGCGAGTATTTGTACGTTGCCGAAATTGCAGAATTTCACTTACTCGTTTAATTTCTTCTGCAGTGAGCCGTCGTTGTGCCTGAATATTCTGGCCAGTGATGACCAGAAAAACTGTTTGCCGGAAAAGCCACTGCAACGTTCGCCGGAGGAATGTAAGGCTTTCTATTCTTACCCTGTTGATTGTGGTGTTTTTGGCTGCACCCGTCGGACGCCACAGCCGCCGTCACCGCCTTATTGA 1119 52.46 MKASNPLLLISILIFLPKPSLQASPPRSPPPFIPNPRLLTAYTALQAWKHAILSDPTNFTANWYGPNVCNYSGIFCAPAPDDPDILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNGFCGTVPDSFRYLSLLFELDLSNNDFSGEFPSVILSLNSLKFLDIRFNKFHGEIPSPLFHMNLDALFINNNNFTFSLSENIANSPVSVLVFANNNINGCLPRSLSNMNQTLDEIIITNSGLNGCLPPEIGSLTNLTVFDVSENNLVGPLPGTMAGMKKLEQLNVAHNQLSGEIPASICTLPKLQNFTYSFNFFCSEPSLCLNILASDDQKNCLPEKPLQRSPEECKAFYSYPVDCGVFGCTRRTPQPPSPPY 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49718184 49719673 - Sed0006716.1 Sed02g1338 705006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1338 372 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 222 316 - -
Sed02g1338 372 Pfam Leucine rich repeat 231 289 IPR001611 GO:0005515(InterPro)
Sed02g1338 372 Gene3D Ribonuclease Inhibitor 202 322 IPR032675 -
Sed02g1338 372 Gene3D Ribonuclease Inhibitor 41 201 IPR032675 -
Sed02g1338 372 Pfam Leucine rich repeat N-terminal domain 43 76 IPR013210 -
Sed02g1338 372 Pfam Leucine Rich Repeat 136 156 IPR001611 GO:0005515(InterPro)
Sed02g1338 372 Pfam Leucine Rich Repeat 159 180 IPR001611 GO:0005515(InterPro)
Sed02g1338 372 FunFam Leucine-rich repeat extensin-like protein 1 42 203 - -
Sed02g1338 372 SUPERFAMILY L domain-like 41 321 - -
Sed02g1338 372 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 32 368 IPR051582 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1338 Sed-Chr2:49718184 Sed12g1856 Sed-Chr12:29807283 1.10E-45 dispersed
Sed05g1943 Sed-Chr5:32794399 Sed02g1338 Sed-Chr2:49718184 2.40E-52 transposed
Sed12g0961 Sed-Chr12:5979910 Sed02g1338 Sed-Chr2:49718184 4.30E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1338 - - - 0.0