Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1339 ATGGGCAATGCAGAAATTGAATGCCCTCATCGAGTGACCATTCCACCCACAAAGCCATTCTTGGAGTCATTAGGCTCAAACCTCAAAGAAACCTTCTTCCCGGATGACCCTTTTAAACAATTCAAAAACCGCCCTTTAGGATCCCAATTTCTCCTCTGGCTCCAATACTTCATCCCCATTCTCGAATGGGCTCCTCGCTACTCTCTCGACTTCCTCAAATCCGACCTCATCTCCGGTATCACCATTGCGAGTCTCGCCATCCCTCAAGGCATCAGTTACGCCAAACTGGCTGACATCCCTCCCATCATTGGGCTCTATTCGAGCTTTGTCCCACCGTTGATATACGCAATGCTCGGTAGCTCGAAGGACTTGGCGGTGGGGACGATGGCAGTAGCATCGTTGCTCATGGCCACCATGATGGGGAAAGAAGTCAGCCCGGTTGACCATCCAGAACAATATGTTCAATTGGTTTTCACTGCTACCTTTTTTGCTGGAGCTTTACAAGTTACCCTCGGCTTTCTAAGATTGGGGTTTATTGTGGACTTTTTGTCACATGCAACAATAGTGGGGTTCATAGGTGGGGCTGCCACGGTGGTTTGTCTTCAACAGCTAAAAGGAATAACGGGATTGATTCATTTTACACATGAAACGGATATTGTTTCCGTTATGCGCGCCCTTTTCTCTCAAGTTCATAAGTGGAGATGGGAAAGTTTAGTGTTGGGCTGTTGTTTTCTCTTCTTTCTCCTTCTCACCAGACATTTGAGCAAGAAGAAACCAAACTTGTTTTGGATAAACGCATTGGCGCCGTTGACATCGGTCATTTTGGGAAGCGTTCTTGTGTACTTCACCCACGCTGAAAATCATGGAATTCAAGTGATTGGGCAGTTGAAGAAAGGGTTGAATCCCCCATCTGTATCTGATTTAGTGTTTGGATCTCCCCATCTCCCCATTGCCATCAAAACAGGGTTCATCACTGGAATCATTGGCCTTGCTGAAGGAGTAGCAGTGGGAAGAAGTTTTGCTGCTTTTAAGAACTACCACATTGATGGCAACAAGGAGATGATAGCATTTGGAATGATGAACATTGTTGGTTCCTTCACTTCTTGCTACTTGACTGCTGGACCATTTTCAAGGACTGCTGTAAATTTCAACGCAGGATGTAAAACTGCAGTATCCAATATTGTCATGGCAATGGCTCTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACGCCCCTTGTGGTGCTCTCCTCCATAATCATCGCTGCTATGCTTGGTCTAATCAACTATGAAGAATTCATCCACCTTTGGAAAATCGACAAATTTGACTTTGTCGTTTGCCTCGGTGCATATGTCGGTGTCGTCTTTGGCAGTGTTGAAACAGGATTGATTGTTGCGGTTTCACTCTCCGTCGTAAGGTTGCTTCTCGTGATTGCGAGGCCAAGAACTTTAGCGTTAGGCAATATTCCCAACTCCACAATTTACAGAAGCATTGATCAATACCCAACAGCTAACCGTGTGCCTGGAATTCTCATCCTTCAATTGGAAGCCCCAATCTATTTTGCCAACTCAAATTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGATGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATTATTTTAGATGTTTCCGGTGTAAGTAGCATTGACTCAAGTGGGATCAGCTTGCTTAAAGGGATTAATAAGAGTACTGAAAGAAAGGATCTCAAACTTGTGCTTGCAAATCCAAGAAGTGAAATGATCAAAAAGCTAAACGAGTCGAAATTCATCGAAGAAATCGGGCGCGAATCAATCTATCTTACTGTGGGAGAGGCTGTTACAGCCTGCAACATCAAGCTCCTCACAAGGAAGCCAAATCATGTTGCTGCTGCTGAATTAGATTCATCTTTGAACAAAGTCTAG 1953 44.34 MGNAEIECPHRVTIPPTKPFLESLGSNLKETFFPDDPFKQFKNRPLGSQFLLWLQYFIPILEWAPRYSLDFLKSDLISGITIASLAIPQGISYAKLADIPPIIGLYSSFVPPLIYAMLGSSKDLAVGTMAVASLLMATMMGKEVSPVDHPEQYVQLVFTATFFAGALQVTLGFLRLGFIVDFLSHATIVGFIGGAATVVCLQQLKGITGLIHFTHETDIVSVMRALFSQVHKWRWESLVLGCCFLFFLLLTRHLSKKKPNLFWINALAPLTSVILGSVLVYFTHAENHGIQVIGQLKKGLNPPSVSDLVFGSPHLPIAIKTGFITGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSFTSCYLTAGPFSRTAVNFNAGCKTAVSNIVMAMALMITLLFLTPFFHYTPLVVLSSIIIAAMLGLINYEEFIHLWKIDKFDFVVCLGAYVGVVFGSVETGLIVAVSLSVVRLLLVIARPRTLALGNIPNSTIYRSIDQYPTANRVPGILILQLEAPIYFANSNYLRERLSRWITDEEERIKSSGETSLQYIILDVSGVSSIDSSGISLLKGINKSTERKDLKLVLANPRSEMIKKLNESKFIEEIGRESIYLTVGEAVTACNIKLLTRKPNHVAAAELDSSLNKV 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49724196 49728719 - Sed0003253.1 Sed02g1339 705007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1339 650 Pfam Sulfate permease family 72 451 IPR011547 GO:0016020(InterPro)
Sed02g1339 650 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Sed02g1339 650 FunFam Sulfate transporter 31 483 629 - -
Sed02g1339 650 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Sed02g1339 650 Gene3D STAS domain 483 629 IPR036513 -
Sed02g1339 650 Pfam STAS domain 504 622 IPR002645 -
Sed02g1339 650 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed02g1339 650 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Sed02g1339 650 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
Sed02g1339 650 PANTHER SULFATE TRANSPORTER 48 627 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1339 Sed-Chr2:49724196 Sed09g1100 Sed-Chr9:34958780 1.30E-257 dispersed
Sed12g0962 Sed-Chr12:5988047 Sed02g1339 Sed-Chr2:49724196 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1339 K17471 - csv:101203205 1065.45