Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed02g1349 ATGCCAGTGCGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAACCCCATTTTCAGAACAATGTTCAAAAAGCTCCAAAATCAACCCAAAATGGCAAAGGATCGCTGAATATGGAGCCCCAAAACATCAAATCTCGAAGCCCGTCTTCTCCTCCTCCGAGCAAAAACAGGGGCCGGAGAAGAAGCAGAGGCGGCCGGAAGTCCGATCAGGGAGAAGTGTTCATGAGGCCGAGTTCTCGGCCCTGCACGGCGATGCGAAAACCGAATGGACCGGAGAGTATGGAGGGAGCTTTAGTGGAAAGTACTAATCCTATCCCAAATGGTGCAAACACTTGTGGGATGGAATTGGGTTTTCGTAATGCAAGCAAATCTGCGAGTTTTGTACCAAGGCCTGGATTTGGACAAGTTGGAACAAAGTGTATTGTAAAAGCAAATCATTTCTTTGCAGAGTTACCAAACAAAGACTTGAATCAATATGATGTTTCAATTACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCGTGGCTGAATTGGTGAGATTACACAGAGAATCTGATTTAGGAAAAAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTTTGGAAAGAGTTTAACATCAAGCTTATGGATGAAGATGATGGAGCCAGTGGTCCCAGGAGGGAGAGGGAATACAAAGTAGTTATTAAGTTTGTTGCACGTGCCAATTTACACCATTTGGGCCAGTTTCTTGCTGGTAAGCGCGCGAATGCACCTCAAGAAGCCCTTCAAATACTGGACATTGTATTGAGGGAGCTGCCATCCAAAAGGTACTGTCCTATAGGCAGATCTTTCTTTTCTCCTGATATTAGATCGCCTCAACGGCTCGGTGATGGACTAGAATCATGGTGTGGTTTTTATCAGAGTATAAGACCTACTCAAATGGGACTCTCTCTGAACATTGATATGGCTTCAGCTGCATTTATCGAGCCTCTCCCTGTCCTTGAATCTGTTGCTCAGCTTCTAGGGAAAGATGTTTTGTCCAGGCCATTGTCGGATTCAGATCGCGTAAAGATAAAAAAAGCTCTTAGAGGGGTGAAAGTTGAGGTAACGCACCGGGGTAATGTAAGGCGGAAGTATCGTGTTTCAGGTCTGACATCACAGCCTACAAGAGAATTAGTGTTTCCTGTCGATGACAACTCGACCATGAAGTCAGTTGTTGAATACTTCCAAGAGATGTATGGCTTCACCATTCAATATGCGCATCTCCCTTGCCTTCAAGTAGGGAACCAGAAGAAGGCAAATTATTTACCAATGGAGGCCTGCAAAATTGTAGGGGGGCAAAGATATACAAAGAGATTGAATGAGAAGCAAATAACGGCACTTCTAAAAGTCACATGTCAAAGACCTCGAGATCGAGAAAATGACATTTTGCAGACTGTTCAACATAATGCCTATGACAGTGATCCTTATGCAAAAGAGTTCGGAATTCGAATCAGTGAAAGGATGGCATCTGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATATCATGACACTGGAAAAGAGAAGGATTGTTTGCCTCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAATCGATGGGCGTGTATAAACTTCTCTAGGAGTGTGCAAGAGAACGTTGCACGTGGATTTTGTTCTGAGCTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTTAATCCAGAACCAGTTATTCCAATATACAATGCTAGACCAGAACAGGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACAAAAGGGAAAGAGTTAGAGCTATTATTAGCTATTTTACCCGACAATAACGGCTCACTTTACGGTGATCTTAAGCGAATTTGTGAAACTGATCTTGGTTTAATATCACAATGCTGTCTTACAAAATATGTGTTCAAGATTAGCAAGCAGTACCTCGCTAACGTTTCACTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATAAGCTGCAGGATACCGCTTGTGAGCGACATACCAACTATTATATTTGGAGCGGACGTGACTCATCCGGAGAACGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTTGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAATATGCTGGACTAGTATGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTGTCCGTGGCACCGTCAGCGGTGGCATGATCAGGGATCTTCTGATTTCCTTTAGGAAAGCCACAGGGCAGAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTAAGCGAAGGACAATTCTATCAAGTATTACTTTATGAGTTGGATGCAATCAGAAAGGCATGTGCTTCTTTAGAACCAAATTACCAACCACCCGTCACGTTCATCGTTGTACAAAAACGACACCACACCCGATTGTTTCCCAACAACCATAGAGACAGAAGTAGTACAGACAGGAGTGGAAACATTTTGCCTGGCACCGTAGTTGACTCTAAAATATGTCATCCAACTGAATTTGATTTCTATCTCTGTAGCCATGCTGGAATTCAGGTATTAACGTCCTCCCTTCTTCCAAGTGAACAATTACTTCATATTCTTGTGCTAGATAACTGTTTGTTCTTTCATTTGTTGTAG 2739 42.97 MPVRQMKESSEQHLVIKPHFQNNVQKAPKSTQNGKGSLNMEPQNIKSRSPSSPPPSKNRGRRRSRGGRKSDQGEVFMRPSSRPCTAMRKPNGPESMEGALVESTNPIPNGANTCGMELGFRNASKSASFVPRPGFGQVGTKCIVKANHFFAELPNKDLNQYDVSITPEVASRTVNRAIVAELVRLHRESDLGKRLPAYDGRKSLYTAGELPFVWKEFNIKLMDEDDGASGPRREREYKVVIKFVARANLHHLGQFLAGKRANAPQEALQILDIVLRELPSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLESVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQYAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDSDPYAKEFGIRISERMASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQENVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKYVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFPNNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVLTSSLLPSEQLLHILVLDNCLFFHLL 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49802944 49811152 - Sed0027885.3 Sed02g1349 705017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed02g1349 912 SMART Piwi_a_2 625 912 IPR003165 GO:0003676(InterPro)
Sed02g1349 912 Gene3D - 515 688 - -
Sed02g1349 912 Pfam Argonaute linker 1 domain 285 335 IPR014811 -
Sed02g1349 912 SMART PAZ_2_a_3 341 473 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed02g1349 912 Pfam Piwi domain 626 885 IPR003165 GO:0003676(InterPro)
Sed02g1349 912 ProSiteProfiles Piwi domain profile. 625 912 IPR003165 GO:0003676(InterPro)
Sed02g1349 912 CDD Piwi_ago-like 495 885 IPR045246 -
Sed02g1349 912 FunFam Argonaute 10 515 688 - -
Sed02g1349 912 Gene3D paz domain 330 455 - -
Sed02g1349 912 SUPERFAMILY PAZ domain 331 491 IPR036085 GO:0005515(InterPro)
Sed02g1349 912 MobiDBLite consensus disorder prediction 1 108 - -
Sed02g1349 912 CDD PAZ_argonaute_like 336 450 - -
Sed02g1349 912 ProSiteProfiles PAZ domain profile. 338 451 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed02g1349 912 Pfam PAZ domain 363 467 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed02g1349 912 MobiDBLite consensus disorder prediction 15 57 - -
Sed02g1349 912 Pfam Argonaute linker 2 domain 477 523 IPR032472 -
Sed02g1349 912 Gene3D - 694 903 IPR036397 GO:0003676(InterPro)
Sed02g1349 912 FunFam Protein argonaute-2 330 456 - -
Sed02g1349 912 Pfam Mid domain of argonaute 534 611 IPR032473 -
Sed02g1349 912 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 132 885 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Sed02g1349 912 Pfam N-terminal domain of argonaute 141 275 IPR032474 -
Sed02g1349 912 SUPERFAMILY Ribonuclease H-like 613 886 IPR012337 -
Sed02g1349 912 SMART DUF1785_2 284 336 IPR014811 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1349 Sed-Chr2:49802944 Sed02g1351 Sed-Chr2:49802944 0.00E+00 dispersed
Sed02g1348 Sed-Chr2:49802944 Sed02g1349 Sed-Chr2:49802944 0.00E+00 tandem
Sed02g1349 Sed-Chr2:49802944 Sed02g1350 Sed-Chr2:49802944 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed02g1349 K11593 - csv:101221352 1652.88