Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed02g1349 | ATGCCAGTGCGGCAAATGAAAGAGAGCTCCGAGCAGCACCTTGTAATCAAACCCCATTTTCAGAACAATGTTCAAAAAGCTCCAAAATCAACCCAAAATGGCAAAGGATCGCTGAATATGGAGCCCCAAAACATCAAATCTCGAAGCCCGTCTTCTCCTCCTCCGAGCAAAAACAGGGGCCGGAGAAGAAGCAGAGGCGGCCGGAAGTCCGATCAGGGAGAAGTGTTCATGAGGCCGAGTTCTCGGCCCTGCACGGCGATGCGAAAACCGAATGGACCGGAGAGTATGGAGGGAGCTTTAGTGGAAAGTACTAATCCTATCCCAAATGGTGCAAACACTTGTGGGATGGAATTGGGTTTTCGTAATGCAAGCAAATCTGCGAGTTTTGTACCAAGGCCTGGATTTGGACAAGTTGGAACAAAGTGTATTGTAAAAGCAAATCATTTCTTTGCAGAGTTACCAAACAAAGACTTGAATCAATATGATGTTTCAATTACTCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCGTGGCTGAATTGGTGAGATTACACAGAGAATCTGATTTAGGAAAAAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAGCTTCCTTTTGTTTGGAAAGAGTTTAACATCAAGCTTATGGATGAAGATGATGGAGCCAGTGGTCCCAGGAGGGAGAGGGAATACAAAGTAGTTATTAAGTTTGTTGCACGTGCCAATTTACACCATTTGGGCCAGTTTCTTGCTGGTAAGCGCGCGAATGCACCTCAAGAAGCCCTTCAAATACTGGACATTGTATTGAGGGAGCTGCCATCCAAAAGGTACTGTCCTATAGGCAGATCTTTCTTTTCTCCTGATATTAGATCGCCTCAACGGCTCGGTGATGGACTAGAATCATGGTGTGGTTTTTATCAGAGTATAAGACCTACTCAAATGGGACTCTCTCTGAACATTGATATGGCTTCAGCTGCATTTATCGAGCCTCTCCCTGTCCTTGAATCTGTTGCTCAGCTTCTAGGGAAAGATGTTTTGTCCAGGCCATTGTCGGATTCAGATCGCGTAAAGATAAAAAAAGCTCTTAGAGGGGTGAAAGTTGAGGTAACGCACCGGGGTAATGTAAGGCGGAAGTATCGTGTTTCAGGTCTGACATCACAGCCTACAAGAGAATTAGTGTTTCCTGTCGATGACAACTCGACCATGAAGTCAGTTGTTGAATACTTCCAAGAGATGTATGGCTTCACCATTCAATATGCGCATCTCCCTTGCCTTCAAGTAGGGAACCAGAAGAAGGCAAATTATTTACCAATGGAGGCCTGCAAAATTGTAGGGGGGCAAAGATATACAAAGAGATTGAATGAGAAGCAAATAACGGCACTTCTAAAAGTCACATGTCAAAGACCTCGAGATCGAGAAAATGACATTTTGCAGACTGTTCAACATAATGCCTATGACAGTGATCCTTATGCAAAAGAGTTCGGAATTCGAATCAGTGAAAGGATGGCATCTGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATATCATGACACTGGAAAAGAGAAGGATTGTTTGCCTCAAGTGGGTCAATGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAATCGATGGGCGTGTATAAACTTCTCTAGGAGTGTGCAAGAGAACGTTGCACGTGGATTTTGTTCTGAGCTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTTAATCCAGAACCAGTTATTCCAATATACAATGCTAGACCAGAACAGGTAGAGAAAGCTTTGAAGCATGTTTATCATGCTTCCATGAACAAGACAAAAGGGAAAGAGTTAGAGCTATTATTAGCTATTTTACCCGACAATAACGGCTCACTTTACGGTGATCTTAAGCGAATTTGTGAAACTGATCTTGGTTTAATATCACAATGCTGTCTTACAAAATATGTGTTCAAGATTAGCAAGCAGTACCTCGCTAACGTTTCACTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTTCTTCTAGATGCTATAAGCTGCAGGATACCGCTTGTGAGCGACATACCAACTATTATATTTGGAGCGGACGTGACTCATCCGGAGAACGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTTGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAATATGCTGGACTAGTATGTGCTCAGGCTCATAGACAAGAACTTATACAAGACTTGTACAAAACTTGGCAGGATCCTGTCCGTGGCACCGTCAGCGGTGGCATGATCAGGGATCTTCTGATTTCCTTTAGGAAAGCCACAGGGCAGAAGCCTCTAAGAATAATATTTTACAGGGATGGCGTAAGCGAAGGACAATTCTATCAAGTATTACTTTATGAGTTGGATGCAATCAGAAAGGCATGTGCTTCTTTAGAACCAAATTACCAACCACCCGTCACGTTCATCGTTGTACAAAAACGACACCACACCCGATTGTTTCCCAACAACCATAGAGACAGAAGTAGTACAGACAGGAGTGGAAACATTTTGCCTGGCACCGTAGTTGACTCTAAAATATGTCATCCAACTGAATTTGATTTCTATCTCTGTAGCCATGCTGGAATTCAGGTATTAACGTCCTCCCTTCTTCCAAGTGAACAATTACTTCATATTCTTGTGCTAGATAACTGTTTGTTCTTTCATTTGTTGTAG | 2739 | 42.97 | MPVRQMKESSEQHLVIKPHFQNNVQKAPKSTQNGKGSLNMEPQNIKSRSPSSPPPSKNRGRRRSRGGRKSDQGEVFMRPSSRPCTAMRKPNGPESMEGALVESTNPIPNGANTCGMELGFRNASKSASFVPRPGFGQVGTKCIVKANHFFAELPNKDLNQYDVSITPEVASRTVNRAIVAELVRLHRESDLGKRLPAYDGRKSLYTAGELPFVWKEFNIKLMDEDDGASGPRREREYKVVIKFVARANLHHLGQFLAGKRANAPQEALQILDIVLRELPSKRYCPIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLESVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQYAHLPCLQVGNQKKANYLPMEACKIVGGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDSDPYAKEFGIRISERMASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVNRWACINFSRSVQENVARGFCSELAQMCQVSGMEFNPEPVIPIYNARPEQVEKALKHVYHASMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKYVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFPNNHRDRSSTDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQVLTSSLLPSEQLLHILVLDNCLFFHLL | 912 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 49802944 | 49811152 | - | Sed0027885.3 | Sed02g1349 | 705017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed02g1349 | 912 | SMART | Piwi_a_2 | 625 | 912 | IPR003165 | GO:0003676(InterPro) | |
Sed02g1349 | 912 | Gene3D | - | 515 | 688 | - | - | |
Sed02g1349 | 912 | Pfam | Argonaute linker 1 domain | 285 | 335 | IPR014811 | - | |
Sed02g1349 | 912 | SMART | PAZ_2_a_3 | 341 | 473 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed02g1349 | 912 | Pfam | Piwi domain | 626 | 885 | IPR003165 | GO:0003676(InterPro) | |
Sed02g1349 | 912 | ProSiteProfiles | Piwi domain profile. | 625 | 912 | IPR003165 | GO:0003676(InterPro) | |
Sed02g1349 | 912 | CDD | Piwi_ago-like | 495 | 885 | IPR045246 | - | |
Sed02g1349 | 912 | FunFam | Argonaute 10 | 515 | 688 | - | - | |
Sed02g1349 | 912 | Gene3D | paz domain | 330 | 455 | - | - | |
Sed02g1349 | 912 | SUPERFAMILY | PAZ domain | 331 | 491 | IPR036085 | GO:0005515(InterPro) | |
Sed02g1349 | 912 | MobiDBLite | consensus disorder prediction | 1 | 108 | - | - | |
Sed02g1349 | 912 | CDD | PAZ_argonaute_like | 336 | 450 | - | - | |
Sed02g1349 | 912 | ProSiteProfiles | PAZ domain profile. | 338 | 451 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed02g1349 | 912 | Pfam | PAZ domain | 363 | 467 | IPR003100 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
Sed02g1349 | 912 | MobiDBLite | consensus disorder prediction | 15 | 57 | - | - | |
Sed02g1349 | 912 | Pfam | Argonaute linker 2 domain | 477 | 523 | IPR032472 | - | |
Sed02g1349 | 912 | Gene3D | - | 694 | 903 | IPR036397 | GO:0003676(InterPro) | |
Sed02g1349 | 912 | FunFam | Protein argonaute-2 | 330 | 456 | - | - | |
Sed02g1349 | 912 | Pfam | Mid domain of argonaute | 534 | 611 | IPR032473 | - | |
Sed02g1349 | 912 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C | 132 | 885 | - | GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER) | |
Sed02g1349 | 912 | Pfam | N-terminal domain of argonaute | 141 | 275 | IPR032474 | - | |
Sed02g1349 | 912 | SUPERFAMILY | Ribonuclease H-like | 613 | 886 | IPR012337 | - | |
Sed02g1349 | 912 | SMART | DUF1785_2 | 284 | 336 | IPR014811 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1349 | Sed-Chr2:49802944 | Sed02g1351 | Sed-Chr2:49802944 | 0.00E+00 | dispersed | |
Sed02g1348 | Sed-Chr2:49802944 | Sed02g1349 | Sed-Chr2:49802944 | 0.00E+00 | tandem | |
Sed02g1349 | Sed-Chr2:49802944 | Sed02g1350 | Sed-Chr2:49802944 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed02g1349 | K11593 | - | csv:101221352 | 1652.88 |